# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	0.1278	c.37.1.6	122256
1uj2A	252	1.053	c.37.1.6	99452
2cxnA	557	1.985		
3ljkA	543	2.673		
1p3wA	404	3.930	c.67.1.3	87752
3hjbA	574	4.873		
1elqA	390	6.258	c.67.1.3	34436
2od4A	101	8.272	d.58.4.20	148734
2c12A	439	8.755	a.29.3.1,e.6.1.1	129616,129617
1iatA	557	9.745	c.80.1.2	62123
1kmkA	406	13.01	c.67.1.3	68696
1qz9A	416	13.28	c.67.1.3	96621
1h0cA	392	13.76	c.67.1.3	83424
2oa4A	101	14.21	a.4.12.3	148690
1eluA	390	16.60	c.67.1.3	34434
3h20A	323	17.24		
3lvmA	423	17.33		
2an1A	292	19.35		
1u0fA	564	20.16	c.80.1.2	112912
3kgxA	393	22.33		
2hoxA	427	24.36	c.67.1.1	136644
2avwA	311	27.45		
1j3mA	129	29.07	d.129.7.1	103836
1u0tA	307	29.51	e.52.1.1	107567
1okcA	297	31.58	f.42.1.1	93248
3m5rA	133	34.22		
2gp5A	349	34.47		
3kgwA	393	35.87		
1suwA	249	36.33	e.52.1.1	106027
1mwwA	128	36.98	d.80.1.4	91483
3dxtA	354	37.51		
1cm7A	363	38.49	c.77.1.1	35063
2wwjA	348	39.83		
3kz9A	206	40.70		
1qhfA	240	43.03	c.60.1.1	33960
3md7A	293	44.07		
3dffA	273	45.00		
1j2zA	270	46.95	b.81.1.1	90805
3fc7A	125	49.83		
1qhlA	227	52.10	c.37.1.12	32382
3f0hA	376	52.18		
1h6zA	913	52.20	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
1a05A	358	52.87	c.77.1.1	35059
3b89A	252	53.17		
2p24B	259	58.36		
2rjbA	455	58.48		
3d6mB	89	59.22		
2hufA	393	60.33		
2egjA	128	60.75		
2gqrA	237	62.80		
2vv6A	119	63.13		
1yj7A	171	63.50		
1trkA	680	65.40	c.36.1.10,c.36.1.6,c.48.1.1	31803,31804,33090
2p5bA	352	65.51		
3czbA	351	66.07		
3dalA	196	66.50		
1d2fA	390	67.35	c.67.1.3	34411
2gx9A	129	67.47	d.299.1.1	135828
3d6fB	89	68.82		
1kmqA	184	70.04	c.37.1.8	84412
1sc3B	88	72.46		
3mgdA	157	72.97		
3bl4A	124	73.33		
2kkzA	140	73.69		
1cnzA	363	74.72	c.77.1.1	35061
3kkfA	105	75.47		
1v66A	65	82.56	a.140.2.1	113543
2wdtA	232	83.11		
2gviA	204	83.19	d.81.3.1,g.39.1.18	147187,147188
2z9wA	392	84.11		
2da4A	80	85.24		
2zc0A	407	86.73