# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	0.2064	c.37.1.6	122256
1uj2A	252	5.224	c.37.1.6	99452
2c12A	439	5.809	a.29.3.1,e.6.1.1	129616,129617
2cxnA	557	10.57		
3ljkA	543	11.73		
1h0cA	392	12.97	c.67.1.3	83424
1p3wA	404	16.79	c.67.1.3	87752
2oa4A	101	25.34	a.4.12.3	148690
3hjbA	574	26.38		
3d19A	283	36.06	a.29.13.1,a.29.13.1	157176,157177
1elqA	390	37.04	c.67.1.3	34436
1j6rA	214	45.53	d.173.1.2	71598
2zc0A	407	46.62		
2hoxA	427	50.85	c.67.1.1	136644
1d2fA	390	51.25	c.67.1.3	34411
1iatA	557	52.55	c.80.1.2	62123
1wymA	155	52.94		
2od4A	101	54.09	d.58.4.20	148734
2ou6A	190	58.62	a.213.1.2	149020
3kgxA	393	59.03		
1u0tA	307	60.77	e.52.1.1	107567
2jynA	146	65.04		
3md7A	293	66.83		
2avwA	311	69.33		
3fc7A	125	70.15		
1c7nA	399	71.68	c.67.1.3	34413
1u0fA	564	71.92	c.80.1.2	112912
2msbA	115	72.00	d.169.1.1	42355
2ejwA	332	74.81		
1qhlA	227	77.45	c.37.1.12	32382
3dzzA	391	86.74		
3dffA	273	87.30