# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ahfA 377 2.238 2amuA 143 3.101 2ha9A 446 4.186 c.7.1.5 147251 1xrjA 261 4.526 c.37.1.6 122256 1nu7D 282 5.782 a.8.6.1,a.8.6.1 92191,92192 3lb8A 436 5.964 3e4aA 1019 6.699 1uj2A 252 7.939 c.37.1.6 99452 1vd5A 377 8.516 a.102.1.7 108518 1vblA 416 8.553 1qhlA 227 8.618 c.37.1.12 32382 2basA 431 8.847 c.1.33.1,d.110.6.2 128244,128245 1ozhA 566 9.947 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 3hn8A 296 10.49 1jqnA 883 10.67 c.1.12.3 77159 3kgxA 393 10.74 2od4A 101 10.87 d.58.4.20 148734 3euvB 427 10.91 1eluA 390 15.00 c.67.1.3 34434 3cbwA 353 16.20 2afwA 329 17.60 c.56.5.8 126707 2pnwA 380 18.59 b.52.1.4 149707 3ihkA 218 20.44 2wd6A 349 20.49 3f9uA 172 21.51 1t3cA 421 21.99 d.92.1.7 106343 1yloA 348 22.29 b.49.3.1,c.56.5.4 123659,123660 1ofgA 381 22.60 c.2.1.3,d.81.1.5 30064,39979 3l8mA 212 23.48 1k0fA 277 24.81 c.92.2.2 71974 1zbpA 273 25.08 e.61.1.1 124861 3e2dA 502 25.20 3hb9A 1150 25.56 1h6zA 913 26.34 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2fs2A 151 27.74 d.38.1.5 134003 1j6rA 214 27.90 d.173.1.2 71598 2fbwB 252 28.75 1eexB 224 30.16 c.51.3.1 33213 2a6hD 1524 30.32 e.29.1.2 126265 1h0cA 392 30.79 c.67.1.3 83424 1aosA 464 32.17 a.127.1.1 19414 1pxzA 346 37.81 b.80.1.1 111643 1kmkA 406 38.45 c.67.1.3 68696 1okcA 297 39.31 f.42.1.1 93248 2d5lA 706 39.39 2p1mB 594 41.52 1jdwA 423 41.94 d.126.1.2 41129 1j1nA 492 42.99 c.94.1.1 83978 1f46A 140 44.36 d.129.4.1 59643 3ktnA 346 44.74 1oxjA 173 45.00 a.60.1.2,a.118.1.13 87517,87518 3ktcA 333 45.02 1pydA 556 46.13 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1anjA 446 46.66 c.76.1.1 35008 1c4zA 358 47.21 d.148.1.1 41766 2vxkA 190 47.73 2wa0A 240 47.90 2c29D 337 48.27 1mioA 534 49.50 c.92.2.3 35601 2wcxA 537 49.75 1qwoA 442 52.97 c.60.1.2 104620 1mh0A 287 53.51 b.47.1.2 79110 2fpqA 444 54.12 1phkA 298 54.43 d.144.1.7 41635 2citA 282 54.53 c.1.8.3 130499 3iehA 276 54.68 3g7nA 258 54.86 2g62A 325 55.22 a.268.1.1 134685 2c12A 439 58.18 a.29.3.1,e.6.1.1 129616,129617 1eg5A 384 60.64 c.67.1.3 34429 2atfA 200 60.75 b.82.1.19 127290 1ekjA 221 61.79 c.53.2.1 33364 2ckiA 262 62.85 2or4A 709 62.87 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 1x3lA 440 63.39 3d19A 283 67.60 a.29.13.1,a.29.13.1 157176,157177 2vq9A 148 67.67 2vgaA 207 68.38 3h6nA 127 68.48 1tn6A 382 70.68 a.118.6.1 112527 1e7uA 961 71.50 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 3klqA 141 72.51 1iv8A 720 72.58 b.71.1.1,c.1.8.1 76842,76843 3dalA 196 74.03 2cfeA 162 74.21 b.62.1.1 130375 2gx5A 170 74.27 1ox6A 555 74.76 c.1.2.1,c.23.16.1 87505,87506 1auoA 218 74.94 c.69.1.14 34716 2ejwA 332 75.06 2f48A 555 76.16 c.89.1.1 132915 3lstA 348 76.39 2waqA 880 76.72 2r7dA 469 76.84 b.40.4.5,b.40.4.16 151629,151630 3iszA 377 77.78 1rqjA 299 79.16 a.128.1.1 97744 2x52A 171 80.30 1szqA 483 80.60 e.44.1.1 99045 1ov2A 99 82.40 a.13.1.1 93580 1dl2A 511 83.99 a.102.2.1 18844 3m62A 968 85.73 2w20A 471 85.99 1dgmA 363 86.10 c.72.1.1 34936 3ftbA 361 86.49 3havA 299 86.92 2nq5A 755 86.94 3bwsA 433 87.75 1hleA 345 87.81 e.1.1.1 42618 1d2fA 390 88.27 c.67.1.3 34411