# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	0.1617	c.37.1.6	122256
1uj2A	252	3.353	c.37.1.6	99452
2c12A	439	4.449	a.29.3.1,e.6.1.1	129616,129617
1p3wA	404	9.826	c.67.1.3	87752
2cxnA	557	10.35		
3ljkA	543	17.50		
2oa4A	101	19.21	a.4.12.3	148690
2od4A	101	28.57	d.58.4.20	148734
1elqA	390	32.77	c.67.1.3	34436
3d19A	283	32.79	a.29.13.1,a.29.13.1	157176,157177
1kmkA	406	32.97	c.67.1.3	68696
3kgxA	393	33.74		
3hjbA	574	38.64		
1u0tA	307	38.89	e.52.1.1	107567
1iatA	557	40.27	c.80.1.2	62123
1h0cA	392	42.66	c.67.1.3	83424
1wymA	155	44.76		
2zc0A	407	46.18		
1okcA	297	48.48	f.42.1.1	93248
3kgwA	393	50.87		
1snrA	341	53.79	b.6.1.3,b.6.1.3	105823,105824
1eluA	390	57.65	c.67.1.3	34434
1qhlA	227	61.32	c.37.1.12	32382
2avwA	311	64.53		
1j6rA	214	73.88	d.173.1.2	71598
1tn6A	382	77.48	a.118.6.1	112527
3czbA	351	79.75		
2hoxA	427	81.09	c.67.1.1	136644
3dffA	273	81.32		
2amuA	143	82.76		
3m5rA	133	83.35		
1qhfA	240	89.55	c.60.1.1	33960