# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	1.143	c.37.1.6	122256
1h0cA	392	7.166	c.67.1.3	83424
1uj2A	252	19.69	c.37.1.6	99452
2r6uA	148	22.29		
2amuA	143	27.57		
1jh6A	189	37.72	d.61.1.1	66707
2oa4A	101	41.81	a.4.12.3	148690
2hoxA	427	41.91	c.67.1.1	136644
3kkfA	105	46.07		
1wymA	155	53.85		
3iaeA	570	55.48		
3hm0A	167	66.63		
3i1aA	339	68.95		
1xvqA	175	72.11	c.47.1.10	116094
2zt9A	215	76.72		
2zwiA	373	81.94		
1fiy	883	84.34		
3klqA	141	85.94