# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ceqA 316 2.931 c.2.1.5,d.162.1.1 30163,42130 3b98A 475 3.673 1guzA 310 6.529 c.2.1.5,d.162.1.1 65586,65587 1aquA 297 7.297 c.37.1.5 31942 2r1fA 270 7.844 2j5vA 367 8.642 1jr3D 343 10.67 a.80.1.1,c.37.1.20 63251,63252 2vebA 195 10.99 3czpA 500 11.05 1r49A 592 13.51 a.2.8.1,d.163.1.2,e.15.1.1 96983,96984,96985 1jqoA 970 15.73 c.1.12.3 77160 1cy9A 264 16.95 e.10.1.1 43236 2akoA 251 18.52 c.73.1.3 126923 2es4D 332 19.65 a.137.15.1 145122 2hnhA 910 19.72 1j8yF 297 20.33 a.24.13.1,c.37.1.10 62747,62748 1r9dA 787 20.74 c.7.1.1 104865 1bjtA 793 22.35 e.11.1.1 43249 2j91A 503 22.46 1ur5A 309 23.40 c.2.1.5,d.162.1.1 99807,99808 1e79D 482 24.12 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1zd1A 284 24.18 2aamA 309 24.63 c.1.8.15 126489 1i1iP 681 26.35 d.92.1.5 40297 1gcwB 135 26.48 a.1.1.2 15591 1mijA 152 26.59 a.4.1.1 79150 1wwiA 148 27.43 a.22.1.4 121362 1ls6A 295 27.52 c.37.1.5 91115 2w69A 216 27.54 1a31A 538 28.07 d.163.1.2,e.15.1.1 42170,43263 1zeeA 403 28.22 a.266.1.2 124981 1lshA 1056 28.26 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 3ii1A 535 28.94 2q0zX 339 29.10 a.289.1.1,b.1.18.22 149993,149994 1y82A 157 29.52 c.120.1.1 122732 2uw1A 338 29.62 1cfr 285 31.07 2ox6A 166 31.69 a.35.1.6 149053 2c9eA 327 31.86 3fw6A 534 32.01 1rwhA 757 32.02 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1nc5A 373 32.48 a.102.1.6 85548 1gcvB 136 34.44 a.1.1.2 15589 1vdzA 588 34.83 1rrjA 565 37.05 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 2eyqA 1151 38.66 b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1 132590,132591,132592,132593,132594,132595 1fmjA 351 38.69 c.37.1.5 59879 3lmbA 165 39.63 1uehA 253 39.91 c.101.1.1 99259 1vasA 137 40.36 a.18.1.1 16404 1tdpA 111 40.51 a.29.8.1 106781 1lpqA 564 41.37 a.2.8.1,d.163.1.2,e.15.1.1 74174,74175,74176 3im1A 328 41.41 1seuA 592 41.54 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 3dvoA 338 42.96 1uayA 242 44.67 c.2.1.2 88390 2ntzA 192 44.96 1q0sA 259 45.42 c.66.1.28 95509 1j5sA 463 47.21 c.1.9.8 71580 1fjgB 256 48.68 c.23.15.1 31400 1zkdA 387 48.69 c.66.1.52 125184 1jfiB 179 49.57 a.22.1.3 62937 1pprM 312 50.15 a.131.1.1,a.131.1.1 19502,19503 1sur 215 50.40 2wqhA 125 50.78 1efuB 282 52.12 d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 3fj0A 465 52.90 2qwwA 154 53.29 3er9B 479 54.66 1azwA 313 55.45 c.69.1.7 34658 1wotA 98 55.49 d.218.1.5 109470 3cmjA 465 55.65 2g9wA 138 56.65 a.4.5.39 147097 1skyE 473 57.48 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 3i3nA 279 58.27 2ovlA 371 59.37 3iacA 473 59.47 2zxiA 637 59.69 3clqA 421 59.83 3e97A 231 61.17 1knvA 293 61.79 c.52.1.7 68707 1abwA 283 61.83 a.1.1.2,a.1.1.2 15288,15289 3bddA 142 64.35 1lldA 319 64.53 c.2.1.5,d.162.1.1 30177,42144 2ie4A 589 65.94 a.118.1.2 137291 3bfxA 296 66.30 c.37.1.5 155239 2ga9D 469 66.30 e.69.1.1 145190 1omhA 293 67.11 d.89.1.5 93348 2nsfA 261 68.78 a.213.1.4,d.106.1.2 148386,148387 1gm5A 780 69.23 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 2qgnA 322 70.36 1bjt 793 70.76 1iqpA 327 70.78 a.80.1.1,c.37.1.20 62649,62650 2idoB 83 72.50 a.237.1.1 137285 1yf3A 259 72.80 c.66.1.28 123046 1ldg 316 73.93 3ksvA 149 74.70 1cfrA 285 75.35 c.52.1.7 33312 1gxyA 226 75.43 d.166.1.3 76380 1xpxA 163 79.33 a.4.1.1 122230 1td6A 306 79.45 a.234.1.1 112390 1ohuA 175 79.53 f.1.4.1 93029 1rp3A 239 79.89 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2qg8A 163 81.07 2q8xA 331 81.11 2fccA 137 81.14 a.18.1.1 133264 2yqyA 169 82.10 3b64A 112 83.35 1s4bP 674 85.09 d.92.1.5 105252 2vd6A 503 85.21 1t3uA 104 85.47 d.244.1.1 99120 1f7tA 122 87.66 d.150.1.2 59667 3hwkA 414 87.80 1v96A 149 88.27 c.120.1.1 119877 1bccF 109 88.48 f.27.1.1 43700 1evsA 187 89.58 a.26.1.1 16845 1uxjA 309 89.66 c.2.1.5,d.162.1.1 108112,108113