# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dwkA	180	1.849		
1uj2A	252	1.966	c.37.1.6	99452
1xrjA	261	6.645	c.37.1.6	122256
1svmA	377	9.378	c.37.1.20	112126
2oa4A	101	9.779	a.4.12.3	148690
3h8lA	409	10.28		
2avwA	311	12.82		
1y08A	323	14.55	d.3.1.12	116280
3g1lA	256	15.71		
1okcA	297	16.85	f.42.1.1	93248
3gygA	289	20.93		
2vbfA	570	21.33		
1t56A	216	22.26	a.4.1.9,a.121.1.1	106428,106429
3cjwA	244	22.33		
3a7sA	228	22.39		
3e9nA	245	26.94		
2al6A	375	27.30	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
3m5rA	133	35.27		
2k0mA	104	36.92		
3fc6B	266	37.50		
3g1oA	255	38.56		
1t5jA	313	42.19	a.209.1.1	99125
2zmuA	223	42.92		
2j6gA	266	48.05		
3d19A	283	48.78	a.29.13.1,a.29.13.1	157176,157177
1oshA	232	50.15	a.123.1.1	93496
2bcoA	350	52.20	c.56.5.7	128302
1kskA	234	54.55	d.66.1.5,d.265.1.3	72920,90389
1icxA	155	58.44	d.129.3.1	71191
3lw1A	253	59.96		
1omhA	293	60.18	d.89.1.5	93348
3dbyA	269	66.27	a.29.13.1,a.29.13.1	157486,157487
2etvA	346	66.92	c.92.2.4	132372
2rkhA	180	68.72		
1kjsA	74	72.18	a.50.1.1	17792
3f27D	83	72.34		
1zbxB	141	72.44	d.339.1.1	124877
1wiwA	290	78.64	c.80.1.1	114681
2gx9A	129	78.97	d.299.1.1	135828
3eyeA	168	79.37		
3lvmA	423	79.96		
1ds1A	324	80.48	b.82.2.2	28127
2ahfA	377	81.32		
1h3fA	432	82.96	c.26.1.1,d.66.1.4	76631,76632
2kkzA	140	83.87		
2iaiA	230	84.44		
2bngA	149	87.19	d.17.4.8	146156
1vr4A	103	88.10	d.230.5.1	120432