# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uj2A	252	1.148	c.37.1.6	99452
2dwkA	180	1.361		
1xrjA	261	3.848	c.37.1.6	122256
1okcA	297	10.62	f.42.1.1	93248
1svmA	377	11.75	c.37.1.20	112126
2oa4A	101	18.05	a.4.12.3	148690
3cjwA	244	19.67		
2avwA	311	22.09		
3h8lA	409	23.53		
2k0mA	104	23.78		
3a7sA	228	24.93		
3d19A	283	25.05	a.29.13.1,a.29.13.1	157176,157177
1y08A	323	25.74	d.3.1.12	116280
3g1lA	256	28.44		
3e9nA	245	28.78		
2ahfA	377	32.20		
3h0gB	1210	34.57		
1icxA	155	41.21	d.129.3.1	71191
2j6gA	266	42.54		
2rkhA	180	45.79		
3dbyA	269	47.34	a.29.13.1,a.29.13.1	157486,157487
1zbxB	141	47.53	d.339.1.1	124877
1wi0A	113	48.52	d.15.2.2	114657
1t56A	216	50.53	a.4.1.9,a.121.1.1	106428,106429
3m5rA	133	50.99		
3hnqA	144	52.16		
1n45A	233	55.96	a.132.1.1	79981
3g1oA	255	59.26		
3lvmA	423	62.97		
2bcoA	350	63.87	c.56.5.7	128302
3gygA	289	64.55		
3f27D	83	65.80		
2qtwA	124	71.12		
1kjsA	74	73.64	a.50.1.1	17792
1x3aA	100	74.26	a.240.1.1	121659
2wa0A	240	76.90		
1n3lA	372	77.76	c.26.1.1	79966
2h9aA	445	78.38		
2zmuA	223	78.85		
2vjxA	846	84.13	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
3gkrA	336	86.07		
2yvpA	182	86.71