# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dwkA	180	4.660		
1uj2A	252	5.565	c.37.1.6	99452
1svmA	377	8.708	c.37.1.20	112126
3g1lA	256	12.33		
3e9nA	245	13.62		
3cjwA	244	17.93		
2oa4A	101	18.15	a.4.12.3	148690
1xrjA	261	18.69	c.37.1.6	122256
3h8lA	409	19.86		
1t56A	216	28.88	a.4.1.9,a.121.1.1	106428,106429
2al6A	375	29.36	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
3gygA	289	33.55		
3lw1A	253	33.59		
2avwA	311	37.88		
2ahfA	377	38.35		
1oshA	232	39.15	a.123.1.1	93496
3a7sA	228	40.41		
1vr4A	103	40.62	d.230.5.1	120432
3d19A	283	44.76	a.29.13.1,a.29.13.1	157176,157177
2zmuA	223	45.66		
2bcoA	350	46.78	c.56.5.7	128302
1y08A	323	46.86	d.3.1.12	116280
2od4A	101	52.14	d.58.4.20	148734
2vbfA	570	55.26		
2iaiA	230	56.53		
3g1oA	255	58.94		
2wa0A	240	60.50		
3lvmA	423	70.65		
1t5jA	313	72.41	a.209.1.1	99125
3dbyA	269	72.61	a.29.13.1,a.29.13.1	157486,157487
3f5cB	268	78.03		
2qgsA	225	79.48	a.211.1.1	150782
2j6gA	266	81.50		
1v7pC	200	83.21	c.62.1.1	108408
2bngA	149	83.77	d.17.4.8	146156
1kjsA	74	84.07	a.50.1.1	17792
1zbxB	141	84.28	d.339.1.1	124877
3eyeA	168	87.05		
1okcA	297	88.03	f.42.1.1	93248
2fs2A	151	88.38	d.38.1.5	134003
3eeaA	162	88.94