# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gsyA	519	3.407		
1jqnA	883	4.270	c.1.12.3	77159
2nxwA	565	4.308		
1uj2A	252	6.329	c.37.1.6	99452
3ib7A	330	8.395		
2wa0A	240	10.07		
2od4A	101	11.98	d.58.4.20	148734
1icxA	155	13.12	d.129.3.1	71191
1sqjA	789	13.87	b.69.13.1,b.69.13.1	105918,105919
2fs2A	151	14.24	d.38.1.5	134003
2g62A	325	14.68	a.268.1.1	134685
3c5aA	264	15.45		
3lb8A	436	15.82		
2z30A	320	17.20		
1eexB	224	17.26	c.51.3.1	33213
2dwkA	180	17.35		
3g1lA	256	17.44		
2jg0A	535	17.99	a.102.1.9	148034
1pvdA	537	18.24	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
2px2A	269	18.43		
1hzfA	367	20.02	a.102.4.4	76731
2i5nL	273	20.15	f.26.1.1	137066
3fveA	290	20.61		
3fsiA	255	21.89		
3i4sA	149	22.36		
3kyhC	461	22.68		
2basA	431	23.52	c.1.33.1,d.110.6.2	128244,128245
2dwcA	433	23.81		
2c0rA	362	26.71	c.67.1.4	129604
1yocA	147	26.80	d.38.1.5	123778
2jayA	291	27.51		
1kl7A	514	28.85	c.79.1.1	72678
3d19A	283	28.88	a.29.13.1,a.29.13.1	157176,157177
2hhjA	267	29.92	c.60.1.1	136497
1yucA	255	30.59		
3g7qA	417	30.64		
2vgaA	207	32.85		
1zbpA	273	33.61	e.61.1.1	124861
3h0gA	1752	34.06		
1g6aA	271	35.99	e.3.1.1	42704
1qo8A	566	36.47	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1mtyD	512	37.44	a.25.1.2	16742
1oxjA	173	39.02	a.60.1.2,a.118.1.13	87517,87518
3klyA	280	39.87		
1xd3A	230	40.48	d.3.1.6	115145
2z7bA	270	41.45		
1zp4A	304	42.28		
1clcA	639	42.85	a.102.1.2,b.1.18.2	18835,21872
2p5bA	352	43.03		
2wkrA	332	43.31		
2de0X	526	44.52		
1z6rA	406	45.57	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1wycA	392	45.59	e.3.1.1	145838
1svmA	377	46.41	c.37.1.20	112126
1o7fA	469	46.42	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1okcA	297	47.21	f.42.1.1	93248
1v4pA	157	49.29	d.67.1.2	113533
1ozhA	566	49.65	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
2vxkA	190	51.40		
2i3oA	516	51.82	d.153.1.6	137027
1xdfA	157	52.14	d.129.3.1	121868
3cjwA	244	53.23		
2d1zA	436	53.59		
3hnqA	144	54.04		
2f2uA	402	54.81		
3llxA	376	55.39		
2cfeA	162	55.74	b.62.1.1	130375
1tjlA	151	56.20	a.2.14.1,g.39.1.13	107027,107028
3czhA	481	56.44	a.104.1.1	157149
1nu7D	282	56.49	a.8.6.1,a.8.6.1	92191,92192
1fcyA	236	56.56	a.123.1.1	19282
1w7cA	747	58.15	b.30.2.1,d.17.2.1,d.17.2.1	145814,145815,145816
1o7eA	276	58.35	e.3.1.1	92622
1bsgA	266	58.57	e.3.1.1	42729
2pnwA	380	58.95	b.52.1.4	149707
2uvpA	186	59.32		
2oa4A	101	59.59	a.4.12.3	148690
2dylA	318	62.08		
3dsyL	281	62.15		
2nq5A	755	62.52		
2hpkA	208	62.67		
3h3iA	150	64.37		
3lstA	348	65.75		
3hkjB	259	67.78		
1iomA	377	71.08	a.103.1.1	83698
3f9pA	114	72.08		
2ha9A	446	72.23	c.7.1.5	147251
3h2yA	368	72.43		
2rdyA	803	72.50		
2calA	154	75.05		
2rccA	346	75.60		
3l8mA	212	75.87		
1y10A	407	77.35		
3c0qA	301	77.74		
2qgsA	225	78.09	a.211.1.1	150782
3f5cB	268	78.14		
2wwjA	348	78.21		
1w9pA	433	78.72	c.1.8.5,d.26.3.1	114412,114413
1sqgA	429	80.47	a.79.1.3,c.66.1.38	105912,105913
2hivA	621	82.00		
1z3sA	217	82.66		
3h49A	325	83.21		
1y4wA	518	85.37	b.29.1.19,b.67.2.3	116470,116471
2vjxA	846	88.67	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
1xfsA	178	89.56	d.129.3.5	109589
2j2fA	363	89.66		
3eufA	328	89.68