# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uj2A	252	2.359	c.37.1.6	99452
2dwkA	180	2.564		
1xrjA	261	6.342	c.37.1.6	122256
1svmA	377	8.627	c.37.1.20	112126
2oa4A	101	9.761	a.4.12.3	148690
2avwA	311	14.63		
3a7sA	228	14.89		
1y08A	323	18.06	d.3.1.12	116280
3e9nA	245	19.20		
3h8lA	409	19.29		
3cjwA	244	20.61		
3d19A	283	23.21	a.29.13.1,a.29.13.1	157176,157177
3g1lA	256	33.97		
1okcA	297	38.34	f.42.1.1	93248
3dbyA	269	41.41	a.29.13.1,a.29.13.1	157486,157487
2vbfA	570	45.60		
2rkhA	180	45.97		
2bngA	149	52.44	d.17.4.8	146156
2al6A	375	54.50	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
2bcoA	350	57.29	c.56.5.7	128302
1icxA	155	64.10	d.129.3.1	71191
1oshA	232	65.76	a.123.1.1	93496
3f5cB	268	70.15		
1t56A	216	70.40	a.4.1.9,a.121.1.1	106428,106429
2ahfA	377	75.83		
3fc6B	266	80.34		
3m5rA	133	81.85		
2whmA	385	82.05		
3lvmA	423	82.27		
2od4A	101	83.68	d.58.4.20	148734
1wi0A	113	85.09	d.15.2.2	114657
2wa0A	240	85.84		
2ii1A	301	87.44		
1loxA	662	89.91	a.119.1.2,b.12.1.1	19238,23638