# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dwkA	180	2.827		
3dauA	159	9.232		
1y7wA	291	19.44		
2od4A	101	23.10	d.58.4.20	148734
3dlkA	556	27.49		
3b8mA	280	29.05	d.58.60.1	154961
2oa4A	101	30.62	a.4.12.3	148690
3ia4A	162	31.02		
1vrtA	560	32.18	c.55.3.1,e.8.1.2	33574,43023
1n45A	233	33.82	a.132.1.1	79981
3m5rA	133	38.17		
2zd1A	557	39.66		
3kbuA	326	41.87		
3dkaA	155	42.92		
1hh2P	344	44.05	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1uj2A	252	44.52	c.37.1.6	99452
2rkhA	180	55.78		
1loxA	662	64.78	a.119.1.2,b.12.1.1	19238,23638
1r5eA	115	66.57	a.8.8.1	111701
2ou6A	190	66.75	a.213.1.2	149020
1y08A	323	69.98	d.3.1.12	116280
2avwA	311	74.80		
1upvA	257	75.29	a.123.1.1	113398
2qkwA	164	82.65	a.8.8.1	150848
2bm0A	691	85.07	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1svmA	377	86.00	c.37.1.20	112126