# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r1fA 270 2.180 3lmbA 165 3.022 2ntzA 192 6.307 3bfxA 296 8.425 c.37.1.5 155239 2c9eA 327 8.961 2b4lA 268 10.35 1zx4A 192 10.57 3fnbA 405 10.60 1tjlA 151 11.11 a.2.14.1,g.39.1.13 107027,107028 1vcrA 232 11.86 i.5.1.1 100560 2q3mA 326 13.49 c.37.1.5 139795 1sfxA 109 13.85 a.4.5.50 105505 2uw1A 338 14.94 2a72A 146 15.93 1jqoA 970 16.08 c.1.12.3 77160 3llwA 311 16.47 3cklA 298 16.63 3czpA 500 17.58 2wqhA 125 18.13 1fmjA 351 18.94 c.37.1.5 59879 1mijA 152 20.08 a.4.1.1 79150 1o5hA 214 20.61 a.191.1.1 92497 2fccA 137 22.23 a.18.1.1 133264 1t0tV 248 24.68 d.58.4.10 106229 2qguA 211 24.72 2oarA 174 24.79 f.16.1.1 138973 1oxjA 173 26.82 a.60.1.2,a.118.1.13 87517,87518 2ouxA 286 27.16 a.118.26.1,d.37.1.1 149031,149032 1fthA 122 27.94 d.150.1.2 60028 1w8iA 156 29.69 c.120.1.1 114368 2gwhA 298 32.10 2ppyA 265 32.33 3hykA 122 33.36 2v6eA 558 33.46 1guzA 310 33.97 c.2.1.5,d.162.1.1 65586,65587 1n3lA 372 36.82 c.26.1.1 79966 1lshA 1056 36.98 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 3fy7A 250 37.52 2dlxA 153 38.57 c.47.1.24 146543 2vfkA 205 38.60 1y1xA 191 38.63 a.39.1.8 116374 1ad1A 266 38.71 c.1.21.1 29668 2i6hA 207 40.17 a.118.8.5 147528 3kq5A 393 41.74 2h8oA 335 43.08 3m1tA 275 43.48 1wwiA 148 44.66 a.22.1.4 121362 2i7aA 174 45.19 2d16A 162 45.28 2wyeA 170 45.89 3bniA 229 46.31 2jbzA 143 46.32 2r9gA 204 46.37 a.80.1.2 151768 2zztA 107 48.64 3fiwA 211 48.70 2zptX 295 49.30 3cxnA 274 49.71 2qg8A 163 49.86 2qsiA 137 50.65 1t2dA 322 51.15 c.2.1.5,d.162.1.1 99084,99085 2g9wA 138 51.67 a.4.5.39 147097 2k0mA 104 51.93 1g3mA 294 52.21 c.37.1.5 83268 2jbwA 386 52.70 c.69.1.41 147962 2bl2A 156 53.53 1ls6A 295 54.19 c.37.1.5 91115 1bjtA 793 54.30 e.11.1.1 43249 2w69A 216 56.24 2wdsA 143 56.79 2ox6A 166 57.30 a.35.1.6 149053 1lldA 319 57.50 c.2.1.5,d.162.1.1 30177,42144 2zqqA 272 59.55 3dvoA 338 60.25 3i3nA 279 60.88 2v0pA 234 61.92 3cy5B 145 62.23 1unlD 208 62.99 a.74.1.1 113326 2endA 138 63.94 a.18.1.1 16400 1x46A 150 64.23 1zkdA 387 64.45 c.66.1.52 125184 3clqA 421 64.51 3e5xA 250 65.04 3hjbA 574 65.95 3ieeA 270 66.69 3e6cC 250 67.21 a.4.5.4,b.82.3.2 158038,158039 1iqpA 327 67.30 a.80.1.1,c.37.1.20 62649,62650 3bk6A 188 67.31 2q1zA 184 67.40 2o8iA 165 67.56 a.288.1.1 148676 2j5iA 276 69.20 2ec4A 178 69.46 1n00A 321 69.46 a.65.1.1 85241 3ivpA 126 70.15 3hgtA 328 70.40 3gr1A 227 71.48 1kidA 203 73.08 c.8.5.1 30771 2r6aC 143 74.64 3lyhA 126 75.79 2b1eA 564 76.11 1vhtA 218 77.15 c.37.1.1 100700 3h88A 129 77.28 3e2qA 551 78.26 2p1jA 186 78.87 3i16A 427 79.56 1lvaA 258 79.82 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2wtfA 536 80.38 1yozA 116 82.88 a.253.1.1 123796 1xkrA 206 84.07 d.252.1.1 115421 1kid 203 84.36 1nnwA 252 84.93 d.159.1.5 80674 1jx4A 352 85.21 d.240.1.1,e.8.1.7 90378,90379 2a9uA 144 86.53 a.118.23.1 126450 3i76A 244 86.86 1uw4B 248 87.59 a.118.1.14 100072 3gdjB 146 88.49 1iapA 211 88.66 a.91.1.1 62119 3l56A 222 89.41 3kqfA 265 89.99