# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	3.127	c.67.1.3	128714
2f48A	555	8.639	c.89.1.1	132915
2dwkA	180	14.12		
1t56A	216	14.35	a.4.1.9,a.121.1.1	106428,106429
2oa4A	101	17.81	a.4.12.3	148690
2z9wA	392	19.25		
2i2cA	272	20.89		
3clmA	352	21.12		
1hgxA	183	21.44	c.61.1.1	34027
1g79A	218	22.72	b.45.1.1	25752
3fc7A	125	23.13		
2wbiA	428	26.46		
2k0mA	104	26.84		
1f44A	324	31.17	a.60.9.1,d.163.1.1	64982,64983
3cexA	172	31.88		
3kgwA	393	32.24		
3hgjA	349	32.44		
2ay1A	394	39.79	c.67.1.1	34357
3kawA	140	40.00		
1yvuA	706	40.67	b.34.14.1,c.55.3.10	124120,124121
2btzA	394	41.32		
1jpzA	473	41.48	a.104.1.1	67069
2vigA	391	41.86		
3gqtA	399	43.18		
1okcA	297	44.65	f.42.1.1	93248
2avwA	311	45.57		
3m5rA	133	47.60		
1eg5A	384	48.57	c.67.1.3	34429
2ifaA	208	51.33	d.90.1.1	137329
1tr8A	102	54.04		
1sr7A	259	55.56	a.123.1.1	105957
3cf4A	807	56.36		
2ke4A	98	58.07		
2cxfA	190	59.17	a.256.1.1	131004
1y08A	323	61.19	d.3.1.12	116280
2h9aA	445	61.66		
1sqnA	261	62.91	a.123.1.1	105944
1j09A	468	63.08	a.97.1.1,c.26.1.1	77025,77026
1pyoB	105	63.10		
2jafA	274	66.24		
2etvA	346	67.20	c.92.2.4	132372
2bykA	140	68.78	a.22.1.3	129486
2zfuA	215	72.27		
1rioA	98	73.29	a.35.1.2	97513
2jc7A	244	73.87		
1f4lA	551	74.71	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
1zbxB	141	75.35	d.339.1.1	124877
1xrjA	261	77.77	c.37.1.6	122256
3fv7A	244	82.05		
2qtwA	124	83.16		
1t7rA	269	84.09	a.123.1.1	106635
3hmmA	303	84.79		
1oshA	232	85.55	a.123.1.1	93496
3fosA	214	89.33