# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u5tA	233	3.380	a.4.5.54,a.4.5.54	107684,107685
2i2cA	272	5.102		
2dwkA	180	6.936		
2f48A	555	7.311	c.89.1.1	132915
1okcA	297	12.54	f.42.1.1	93248
1g79A	218	18.25	b.45.1.1	25752
2k0mA	104	19.05		
1hgxA	183	19.05	c.61.1.1	34027
2cxfA	190	22.80	a.256.1.1	131004
2oa4A	101	23.25	a.4.12.3	148690
3fc7A	125	24.36		
2wbiA	428	24.87		
2ke4A	98	32.09		
1eg5A	384	34.75	c.67.1.3	34429
1p5zB	263	36.33	c.37.1.1	87815
3hgjA	349	37.06		
2or0A	414	39.82		
2bkwA	385	41.11	c.67.1.3	128714
2vigA	391	42.42		
1zbxB	141	42.96	d.339.1.1	124877
3m5rA	133	43.31		
3d19A	283	43.72	a.29.13.1,a.29.13.1	157176,157177
3gqtA	399	44.29		
3kawA	140	44.53		
1pyoB	105	49.71		
3clmA	352	49.76		
3co4A	312	51.19		
1zxfA	155	55.74	d.129.3.5	125771
3cexA	172	56.44		
2avwA	311	57.12		
2wa5A	245	57.22		
1xrjA	261	57.71	c.37.1.6	122256
3dbyA	269	58.02	a.29.13.1,a.29.13.1	157486,157487
1rioA	98	59.73	a.35.1.2	97513
1j09A	468	61.69	a.97.1.1,c.26.1.1	77025,77026
1yvuA	706	62.36	b.34.14.1,c.55.3.10	124120,124121
1jpzA	473	62.66	a.104.1.1	67069
3ii9A	396	65.09		
3cf4A	807	68.30		
2zumA	458	70.19		
1t56A	216	70.22	a.4.1.9,a.121.1.1	106428,106429
2ay1A	394	71.39	c.67.1.1	34357
1tr8A	102	71.71		
3fv7A	244	72.07		
2zfuA	215	73.31		
1f44A	324	73.41	a.60.9.1,d.163.1.1	64982,64983
2etvA	346	74.62	c.92.2.4	132372
1u0tA	307	75.25	e.52.1.1	107567
1k55C	246	75.32	e.3.1.1	68158
2jc7A	244	76.36		
3fsiA	255	77.20		
3h52A	254	77.22		
2ifaA	208	79.02	d.90.1.1	137329
2qtwA	124	81.28		
2btzA	394	82.80		
1ajkA	214	86.35	b.29.1.2	24176
2j5bA	348	87.41