# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	2.988	c.67.1.3	128714
1u5tA	233	4.254	a.4.5.54,a.4.5.54	107684,107685
2i2cA	272	5.605		
2dwkA	180	6.442		
3kgwA	393	7.777		
1t56A	216	9.258	a.4.1.9,a.121.1.1	106428,106429
2f48A	555	11.92	c.89.1.1	132915
2k0mA	104	11.94		
3clmA	352	14.48		
1p5zB	263	15.30	c.37.1.1	87815
2ke4A	98	15.48		
1wm3A	72	15.70	d.15.1.1	114736
2oa4A	101	18.58	a.4.12.3	148690
2z9wA	392	20.06		
2a0iA	330	20.51		
1rioA	98	21.87	a.35.1.2	97513
3fc7A	125	23.84		
3caiA	406	24.71		
1pyoB	105	25.33		
1eg5A	384	25.69	c.67.1.3	34429
1g79A	218	26.17	b.45.1.1	25752
2wa0A	240	26.71		
1tr8A	102	30.85		
1okcA	297	31.12	f.42.1.1	93248
2wnwA	447	32.09		
2kiiA	181	32.37		
2hufA	393	34.63		
2a2aA	321	35.06		
2hpvA	208	35.95		
1h21A	247	39.61	a.138.1.3	76510
1yvuA	706	40.25	b.34.14.1,c.55.3.10	124120,124121
3cf4A	807	40.84		
3m5rA	133	42.79		
1hgxA	183	44.70	c.61.1.1	34027
2cxfA	190	47.30	a.256.1.1	131004
3kycD	97	47.78		
1c7nA	399	48.33	c.67.1.3	34413
2wdtA	232	49.81		
2jc7A	244	51.00		
1xjzA	233	52.03	a.132.1.1	122049
3fv7A	244	54.33		
2wbiA	428	56.48		
2avwA	311	56.54		
3hgjA	349	57.00		
2zumA	458	59.08		
1ohuA	175	60.96	f.1.4.1	93029
1xrjA	261	60.96	c.37.1.6	122256
1u0tA	307	61.89	e.52.1.1	107567
2od4A	101	62.65	d.58.4.20	148734
3a4rA	79	64.00		
2ckkA	127	66.07		
3cexA	172	66.52		
2qkwA	164	66.78	a.8.8.1	150848
3hmmA	303	67.22		
2fltA	149	69.67		
2j6gA	266	70.30		
1z15A	344	70.44		
2w4jA	277	70.75		
2eh3A	179	70.94		
1p6xA	334	71.01	c.37.1.1	94195
3bhyA	283	71.08		
1abrA	251	71.47	d.165.1.1	42196
1n45A	233	72.59	a.132.1.1	79981
2kkzA	140	73.56		
2gx9A	129	79.09	d.299.1.1	135828
3kawA	140	79.53		
1ptqA	50	80.24	g.49.1.1	45349
1y08A	323	80.60	d.3.1.12	116280
2j5bA	348	84.20		
1qjtA	99	87.57	a.39.1.6	17335
1fjlA	81	88.87	a.4.1.1	16017
3be6A	297	89.66