# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	5.035	c.67.1.3	128714
2f48A	555	9.630	c.89.1.1	132915
2i2cA	272	15.07		
2oa4A	101	16.98	a.4.12.3	148690
3kawA	140	18.85		
2z9wA	392	20.76		
2dwkA	180	23.35		
1hgxA	183	23.75	c.61.1.1	34027
1p5zB	263	24.85	c.37.1.1	87815
1g79A	218	33.48	b.45.1.1	25752
3hgjA	349	36.65		
2jc7A	244	38.09		
3cexA	172	39.61		
3fv7A	244	40.56		
1sr7A	259	44.18	a.123.1.1	105957
1t56A	216	45.08	a.4.1.9,a.121.1.1	106428,106429
1f4lA	551	45.66	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
2ay1A	394	50.86	c.67.1.1	34357
2od4A	101	51.06	d.58.4.20	148734
3if6A	266	51.22		
3fc7A	125	55.92		
3gqtA	399	62.58		
1f44A	324	63.18	a.60.9.1,d.163.1.1	64982,64983
3ii9A	396	64.03		
1eg5A	384	66.39	c.67.1.3	34429
2cxfA	190	72.71	a.256.1.1	131004
3co4A	312	72.99		
2btzA	394	73.28		
3clmA	352	73.41		
2zumA	458	75.44		
2etvA	346	76.51	c.92.2.4	132372
1h8dH	260	77.09		
2qeaA	160	77.97		
2vigA	391	79.62		
2ke4A	98	80.13		
2cf8H	257	81.83		
1ajkA	214	82.79	b.29.1.2	24176
3dbyA	269	83.08	a.29.13.1,a.29.13.1	157486,157487
1fh9A	312	83.40	c.1.8.3	28913
1pyoB	105	85.20		
3cf4A	807	87.07		
1sqnA	261	87.62	a.123.1.1	105944
1vzqH	250	89.46