# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	4.581	c.67.1.3	128714
2f48A	555	8.811	c.89.1.1	132915
3kawA	140	15.68		
2oa4A	101	16.17	a.4.12.3	148690
1hgxA	183	21.03	c.61.1.1	34027
2i2cA	272	21.64		
2dwkA	180	23.50		
1g79A	218	24.24	b.45.1.1	25752
3hgjA	349	31.11		
2z9wA	392	33.45		
1p5zB	263	39.50	c.37.1.1	87815
2ay1A	394	42.75	c.67.1.1	34357
1sr7A	259	43.05	a.123.1.1	105957
1eg5A	384	45.64	c.67.1.3	34429
2btzA	394	47.83		
2zumA	458	48.65		
3fc7A	125	50.41		
1t56A	216	52.35	a.4.1.9,a.121.1.1	106428,106429
1f44A	324	54.09	a.60.9.1,d.163.1.1	64982,64983
2jc7A	244	64.15		
2od4A	101	65.20	d.58.4.20	148734
2qeaA	160	65.93		
1jpzA	473	67.29	a.104.1.1	67069
3gqtA	399	67.87		
3cexA	172	68.14		
3fv7A	244	68.15		
3co4A	312	74.65		
2ii1A	301	76.22		
2cxfA	190	76.47	a.256.1.1	131004
1zxfA	155	80.20	d.129.3.5	125771
2a2aA	321	81.91		
3d19A	283	83.63	a.29.13.1,a.29.13.1	157176,157177
2ke4A	98	84.80		
1tr8A	102	85.87		
1sqnA	261	86.34	a.123.1.1	105944
3ii9A	396	87.89		
2k0mA	104	88.45		
3clmA	352	89.26