# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	4.554	c.67.1.3	128714
2f48A	555	7.432	c.89.1.1	132915
2z9wA	392	10.13		
2i2cA	272	10.71		
2oa4A	101	15.18	a.4.12.3	148690
3kgwA	393	17.38		
3hgjA	349	22.46		
2dwkA	180	23.01		
1okcA	297	24.25	f.42.1.1	93248
1p5zB	263	24.96	c.37.1.1	87815
2wa5A	245	28.68		
1eg5A	384	31.85	c.67.1.3	34429
1f44A	324	33.08	a.60.9.1,d.163.1.1	64982,64983
1yvuA	706	34.91	b.34.14.1,c.55.3.10	124120,124121
3fv7A	244	34.93		
1f4lA	551	34.95	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
2wa7A	245	36.51		
3clmA	352	36.94		
2jc7A	244	43.00		
2wa6A	245	45.27		
1hgxA	183	47.44	c.61.1.1	34027
2zumA	458	50.17		
3cexA	172	53.76		
2ke4A	98	55.63		
2qeaA	160	58.08		
1pyoB	105	60.87		
1o5oA	221	62.65	c.61.1.1	92509
3m5rA	133	63.36		
2k0mA	104	65.62		
1zxfA	155	66.45	d.129.3.5	125771
3fc7A	125	66.90		
1j09A	468	67.22	a.97.1.1,c.26.1.1	77025,77026
3g4pA	244	68.03		
1g79A	218	68.75	b.45.1.1	25752
3fosA	214	69.57		
1h8dH	260	72.32		
3hmmA	303	72.89		
1m65A	245	73.21	c.6.3.1	84847
3kawA	140	73.76		
1k55C	246	75.95	e.3.1.1	68158
2avwA	311	78.22		
1sr7A	259	79.74	a.123.1.1	105957
3if6A	266	80.78		
1fp1D	372	82.29	a.4.5.29,c.66.1.12	59939,59940
1ohuA	175	83.70	f.1.4.1	93029
1t56A	216	84.00	a.4.1.9,a.121.1.1	106428,106429
3cf4A	807	85.22		
3isgA	251	85.87		
1sqnA	261	86.00	a.123.1.1	105944
3caiA	406	86.34		
2nptA	106	86.52	d.15.2.2	138448
2vigA	391	88.59