# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f48A 555 1.463 c.89.1.1 132915 2bvrH 252 2.220 3cf4A 807 3.525 1g6aA 271 5.014 e.3.1.1 42704 1y42X 392 5.087 1nu7D 282 5.300 a.8.6.1,a.8.6.1 92191,92192 1eg5A 384 5.801 c.67.1.3 34429 3a46A 289 8.585 2e4tA 519 9.431 1ie9A 259 10.50 a.123.1.1 62318 1clcA 639 10.88 a.102.1.2,b.1.18.2 18835,21872 2c0rA 362 11.51 c.67.1.4 129604 2wd6A 349 11.58 3c0qA 301 11.74 3fsiA 255 12.78 2wkrA 332 14.33 2z30A 320 14.33 2wa5A 245 14.39 3dydA 427 14.46 1hgxA 183 14.85 c.61.1.1 34027 1jqnA 883 15.39 c.1.12.3 77159 1s1hC 192 16.17 i.1.1.1 105156 2bkwA 385 16.58 c.67.1.3 128714 3hkjB 259 17.88 2wa0A 240 17.95 2i5nL 273 18.23 f.26.1.1 137066 3hn8A 296 18.71 1vb3A 428 20.21 c.79.1.1 119942 2basA 431 21.72 c.1.33.1,d.110.6.2 128244,128245 2wa7A 245 22.06 2c29D 337 23.15 1sz6A 249 24.30 d.165.1.1 112171 1m65A 245 26.02 c.6.3.1 84847 2pnwA 380 26.26 b.52.1.4 149707 2wabA 341 28.69 2ex0A 399 28.96 c.87.1.9 132494 1dxrL 273 29.27 f.26.1.1 43431 2r0cA 549 30.10 1h8dH 260 30.40 2wa6A 245 30.45 2de0X 526 31.19 2z9wA 392 31.64 1pvdA 537 31.81 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2ieaA 886 34.18 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 3dzzA 391 34.22 3d19A 283 35.40 a.29.13.1,a.29.13.1 157176,157177 3kgxA 393 36.13 3bb0A 609 37.28 2btzA 394 37.89 1oxjA 173 38.50 a.60.1.2,a.118.1.13 87517,87518 2od4A 101 38.96 d.58.4.20 148734 2uvpA 186 40.08 1wkbA 810 40.56 1okcA 297 41.34 f.42.1.1 93248 2z7bA 270 43.85 3ednA 299 45.01 2vxkA 190 45.84 1svvA 359 46.77 c.67.1.1 106054 3fw9A 495 48.81 3b5qA 482 49.65 1hp1A 516 51.28 d.114.1.1,d.159.1.2 70976,70977 3fd9A 256 51.68 1zbpA 273 54.44 e.61.1.1 124861 2fyfA 398 55.25 2f4lA 297 55.90 b.23.3.1 132927 1yu3A 381 56.05 b.163.1.1,d.169.1.8 124031,124032 1o7eA 276 56.26 e.3.1.1 92622 2bvyA 475 57.06 b.1.18.2,c.1.8.3 129301,129302 3ho9A 427 57.35 2ha9A 446 58.16 c.7.1.5 147251 1cmxA 236 59.19 d.3.1.6 37130 3hmmA 303 60.26 2fp3A 316 62.44 2oa4A 101 62.66 a.4.12.3 148690 3h6nA 127 62.91 3f7mA 279 64.66 1sjjA 863 66.06 i.15.1.1 98894 3g7nA 258 67.25 2vbfA 570 67.62 2op6A 152 67.72 1eexB 224 67.76 c.51.3.1 33213 1o5oA 221 68.42 c.61.1.1 92509 2pnqA 467 68.67 1yhtA 367 70.15 c.1.8.6 123213 3m62A 968 70.68 1vgyA 393 71.73 c.56.5.4,d.58.19.1 100620,100621 2rioA 434 71.94 2nxwA 565 72.54 2imqX 282 73.62 d.151.1.2 147733 1z7wA 322 74.28 c.79.1.1 124674 2a6hD 1524 76.34 e.29.1.2 126265 2g62A 325 76.93 a.268.1.1 134685 1hzoA 271 80.99 e.3.1.1 71092 2fs2A 151 81.22 d.38.1.5 134003 2i3oA 516 81.64 d.153.1.6 137027 2zadA 345 81.73 3f8uA 481 82.90 3ihkA 218 83.12 2aaa 484 83.85 3h0gA 1752 84.02 2qddA 378 84.56 1yocA 147 88.62 d.38.1.5 123778