# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f48A	555	8.490	c.89.1.1	132915
2bkwA	385	8.757	c.67.1.3	128714
2z9wA	392	11.04		
3kgwA	393	14.87		
2i2cA	272	15.67		
2oa4A	101	15.84	a.4.12.3	148690
1hgxA	183	24.01	c.61.1.1	34027
1okcA	297	32.67	f.42.1.1	93248
3hgjA	349	38.21		
2k0mA	104	38.75		
1j09A	468	39.20	a.97.1.1,c.26.1.1	77025,77026
1f4lA	551	40.72	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
2dwkA	180	41.04		
3clmA	352	42.52		
2wa5A	245	42.80		
1zxfA	155	43.01	d.129.3.5	125771
2wa7A	245	43.48		
1eg5A	384	50.24	c.67.1.3	34429
2ke4A	98	51.98		
3m5rA	133	52.14		
1o5oA	221	53.22	c.61.1.1	92509
2wa6A	245	56.08		
1g79A	218	56.42	b.45.1.1	25752
3fc7A	125	58.44		
1pyoB	105	60.91		
2hufA	393	63.88		
2qeaA	160	66.48		
1p5zB	263	67.68	c.37.1.1	87815
1f44A	324	68.91	a.60.9.1,d.163.1.1	64982,64983
3fv7A	244	76.97		
3cf4A	807	77.72		
3cexA	172	78.79		
1yvuA	706	81.54	b.34.14.1,c.55.3.10	124120,124121
1wm3A	72	84.19	d.15.1.1	114736
1ajkA	214	84.79	b.29.1.2	24176
2h9aA	445	86.40		
3a46A	289	86.43		
2ay1A	394	86.82	c.67.1.1	34357
2avwA	311	87.36		
2zumA	458	87.58		
1sr7A	259	88.27	a.123.1.1	105957
3fosA	214	89.25