# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p5zB	263	3.340	c.37.1.1	87815
2bkwA	385	10.27	c.67.1.3	128714
1u5tA	233	13.44	a.4.5.54,a.4.5.54	107684,107685
2dwkA	180	13.87		
2i2cA	272	14.57		
1hgxA	183	17.35	c.61.1.1	34027
2oa4A	101	19.36	a.4.12.3	148690
3clmA	352	21.55		
2f48A	555	21.66	c.89.1.1	132915
2z9wA	392	29.00		
2cxfA	190	29.83	a.256.1.1	131004
2wnwA	447	41.60		
1okcA	297	41.96	f.42.1.1	93248
2wa0A	240	42.64		
3kgwA	393	43.34		
1g79A	218	50.03	b.45.1.1	25752
2jc7A	244	51.04		
1zxfA	155	51.15	d.129.3.5	125771
3fv7A	244	52.43		
2k0mA	104	55.14		
2etvA	346	55.94	c.92.2.4	132372
3hgjA	349	56.15		
2ke4A	98	56.18		
2qeaA	160	60.42		
3kawA	140	62.02		
3fcyA	346	62.07		
1eg5A	384	65.04	c.67.1.3	34429
1f44A	324	67.33	a.60.9.1,d.163.1.1	64982,64983
3d19A	283	67.64	a.29.13.1,a.29.13.1	157176,157177
1pyoB	105	73.37		
3m5rA	133	76.06		
1k55C	246	76.72	e.3.1.1	68158
2wa5A	245	77.36		
1svvA	359	80.11	c.67.1.1	106054
1lw3A	657	81.54	b.55.1.8,c.45.1.3	91152,91153
1yvuA	706	82.78	b.34.14.1,c.55.3.10	124120,124121
1m65A	245	83.49	c.6.3.1	84847
1o5oA	221	85.21	c.61.1.1	92509
1h8dH	260	86.30		
3if6A	266	87.70		
2od4A	101	88.33	d.58.4.20	148734