# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p5zB	263	2.982	c.37.1.1	87815
2oa4A	101	7.958	a.4.12.3	148690
2i2cA	272	9.408		
2f48A	555	11.80	c.89.1.1	132915
1hgxA	183	13.67	c.61.1.1	34027
2bkwA	385	15.42	c.67.1.3	128714
2dwkA	180	16.14		
1u5tA	233	16.76	a.4.5.54,a.4.5.54	107684,107685
2jc7A	244	20.98		
3fv7A	244	22.75		
2od4A	101	23.46	d.58.4.20	148734
3hgjA	349	26.19		
2zumA	458	28.41		
1k55C	246	29.65	e.3.1.1	68158
3if6A	266	34.35		
3d19A	283	36.61	a.29.13.1,a.29.13.1	157176,157177
1o5oA	221	37.29	c.61.1.1	92509
2cxfA	190	39.35	a.256.1.1	131004
1g79A	218	42.68	b.45.1.1	25752
1okcA	297	44.60	f.42.1.1	93248
2qeaA	160	49.19		
2ke4A	98	50.14		
3kawA	140	50.34		
1wm3A	72	50.55	d.15.1.1	114736
3hbrA	265	52.05		
2k0mA	104	53.67		
3g4pA	244	53.80		
3m5rA	133	54.33		
1zxfA	155	55.82	d.129.3.5	125771
3clmA	352	58.00		
2avwA	311	58.65		
2z9wA	392	60.78		
3isgA	251	60.87		
1yvuA	706	62.17	b.34.14.1,c.55.3.10	124120,124121
3fc7A	125	64.11		
1j09A	468	64.35	a.97.1.1,c.26.1.1	77025,77026
2etvA	346	65.29	c.92.2.4	132372
3dbyA	269	65.43	a.29.13.1,a.29.13.1	157486,157487
3kgwA	393	65.44		
2wa0A	240	65.72		
2wnwA	447	67.71		
1eg5A	384	70.63	c.67.1.3	34429
1pyoB	105	71.72		
2iwbA	246	72.86		
1zbxB	141	77.19	d.339.1.1	124877
1u0tA	307	81.07	e.52.1.1	107567
2a2aA	321	81.30		
2wbiA	428	81.31		
1h8dH	260	81.32		
3cf4A	807	87.63		
3a46A	289	88.42		
2zfuA	215	89.66