# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkwA	385	7.197	c.67.1.3	128714
2f48A	555	9.033	c.89.1.1	132915
1p5zB	263	11.32	c.37.1.1	87815
2oa4A	101	17.62	a.4.12.3	148690
2dwkA	180	19.51		
2i2cA	272	20.23		
3kgwA	393	20.97		
3clmA	352	21.37		
1u5tA	233	24.95	a.4.5.54,a.4.5.54	107684,107685
2ke4A	98	28.95		
2zumA	458	30.35		
2z9wA	392	32.58		
2jc7A	244	35.52		
1eg5A	384	36.61	c.67.1.3	34429
3fv7A	244	37.10		
3d19A	283	38.96	a.29.13.1,a.29.13.1	157176,157177
2cxfA	190	40.00	a.256.1.1	131004
1hgxA	183	40.41	c.61.1.1	34027
3kawA	140	42.77		
1g79A	218	47.54	b.45.1.1	25752
3hgjA	349	48.98		
1j09A	468	53.99	a.97.1.1,c.26.1.1	77025,77026
1h21A	247	59.47	a.138.1.3	76510
3dbyA	269	60.03	a.29.13.1,a.29.13.1	157486,157487
1okcA	297	60.65	f.42.1.1	93248
1k55C	246	63.65	e.3.1.1	68158
1wm3A	72	66.38	d.15.1.1	114736
3fc7A	125	66.75		
2wnwA	447	67.60		
2od4A	101	69.88	d.58.4.20	148734
3if6A	266	71.26		
3g4pA	244	71.31		
2ay1A	394	71.46	c.67.1.1	34357
2wbiA	428	72.05		
3cf4A	807	73.39		
2a2aA	321	74.17		
1tr8A	102	75.41		
2avwA	311	76.76		
1pyoB	105	77.32		
2vigA	391	79.48		
1u0tA	307	80.37	e.52.1.1	107567
2zfuA	215	86.21		
3hbrA	265	86.52		
3m5rA	133	87.57		
2wa5A	245	87.62		
2qeaA	160	87.66		
1zbxB	141	88.67	d.339.1.1	124877
1f44A	324	88.94	a.60.9.1,d.163.1.1	64982,64983