# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dwkA	180	11.66		
2cxfA	190	14.30	a.256.1.1	131004
3bxwA	393	26.90		
2oa4A	101	35.46	a.4.12.3	148690
1zxfA	155	38.98	d.129.3.5	125771
2z9wA	392	42.37		
1f44A	324	43.86	a.60.9.1,d.163.1.1	64982,64983
1rioA	98	46.18	a.35.1.2	97513
2i2cA	272	49.54		
1ajkA	214	53.64	b.29.1.2	24176
3hm0A	167	58.98		
1riwB	147	64.19		
2jc7A	244	71.13		
2qkwA	164	76.37	a.8.8.1	150848
3egwA	1244	76.68		
3datA	162	77.21		
1h8dH	260	80.94		
1vzqH	250	81.65		
2od4A	101	82.14	d.58.4.20	148734
3m5rA	133	86.34		
3fv7A	244	86.35		
1r0dA	206	88.56	a.216.1.1	104715