# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r1fA 270 0.6306 1sfxA 109 1.534 a.4.5.50 105505 3h9cA 547 4.890 1guzA 310 8.433 c.2.1.5,d.162.1.1 65586,65587 3czpA 500 8.830 3bk6A 188 9.023 2uw1A 338 10.42 1bjtA 793 13.39 e.11.1.1 43249 3lmbA 165 13.41 1vdzA 588 13.85 1zx4A 192 14.11 1zkdA 387 14.51 c.66.1.52 125184 2vfkA 205 14.77 2jbzA 143 14.94 1mijA 152 15.61 a.4.1.1 79150 1uxjA 309 15.72 c.2.1.5,d.162.1.1 108112,108113 1vl2A 421 15.75 c.26.2.1,d.210.1.1 108708,108709 2ntzA 192 17.17 2rdxA 379 17.61 2vebA 195 17.92 1ur5A 309 18.48 c.2.1.5,d.162.1.1 99807,99808 2w69A 216 21.22 3ikjA 588 21.25 3fj0A 465 21.28 1omhA 293 23.27 d.89.1.5 93348 3cmjA 465 23.58 2c9eA 327 24.53 1ad1A 266 25.49 c.1.21.1 29668 3hykA 122 26.10 1y82A 157 27.26 c.120.1.1 122732 1jjvA 206 27.53 c.37.1.1 71698 2q8uA 336 27.54 1xpxA 163 27.72 a.4.1.1 122230 1jqoA 970 28.76 c.1.12.3 77160 3fiwA 211 35.70 3kq5A 393 35.79 2x49A 333 36.24 2yv9A 291 36.31 1lshA 1056 36.42 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1gcwB 135 38.15 a.1.1.2 15591 2ga9D 469 38.59 e.69.1.1 145190 3cg0A 140 38.74 2ouxA 286 39.15 a.118.26.1,d.37.1.1 149031,149032 3er9B 479 39.46 2akoA 251 39.69 c.73.1.3 126923 1t0tV 248 40.74 d.58.4.10 106229 2e3zA 465 44.27 1w53A 84 45.50 a.186.1.2 109175 1knvA 293 45.71 c.52.1.7 68707 1vcrA 232 45.98 i.5.1.1 100560 3hw5A 261 46.67 2qg8A 163 47.65 1nnwA 252 48.49 d.159.1.5 80674 2wdsA 143 48.83 3gr1A 227 52.46 1gxyA 226 54.31 d.166.1.3 76380 1tjlA 151 54.67 a.2.14.1,g.39.1.13 107027,107028 2kmfA 115 54.69 1fjgB 256 54.83 c.23.15.1 31400 2g9wA 138 55.19 a.4.5.39 147097 1uc2A 481 57.33 d.261.1.1 99161 3cklA 298 57.47 1t3uA 104 57.63 d.244.1.1 99120 1rwhA 757 58.12 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1mswD 883 58.21 e.8.1.3 79427 1lvaA 258 58.57 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bl2A 156 59.72 1wwiA 148 59.96 a.22.1.4 121362 2pk3A 321 60.39 3e5xA 250 61.08 3a6fA 260 61.40 2fltA 149 63.06 3bddA 142 63.15 3kc6A 204 63.71 3h88A 129 64.56 2hldD 478 66.94 2fccA 137 67.29 a.18.1.1 133264 3e6uA 411 67.43 1r9dA 787 67.94 c.7.1.1 104865 1cy9A 264 68.00 e.10.1.1 43236 2vwkA 773 68.74 c.55.3.5,e.8.1.1 153677,153678 2jbwA 386 70.44 c.69.1.41 147962 2jdiD 482 70.60 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2zndA 172 71.66 1vhtA 218 72.78 c.37.1.1 100700 2os5A 119 72.90 2zqqA 272 73.04 2r6gF 514 73.52 e.70.1.1,f.58.1.1 151609,151610 1ni3A 392 73.84 c.37.1.8,d.15.10.2 80531,80532 3fi9A 343 74.48 2a72A 146 74.76 1fthA 122 74.90 d.150.1.2 60028 3k8pD 709 75.66 3ksvA 149 75.90 1xkrA 206 77.20 d.252.1.1 115421 1j99A 293 77.37 c.37.1.5 71618 1t7sA 137 78.90 a.7.7.1 106636 2p1mA 163 79.16 3fd0A 409 79.17 2qguA 211 80.90 3f8tA 506 81.28 2ox6A 166 81.29 a.35.1.6 149053 1abbA 828 81.39 c.87.1.4 35536 1j1uA 306 84.32 c.26.1.1 83980 3hlzA 269 84.74 1cfrA 285 85.55 c.52.1.7 33312 1j5sA 463 85.96 c.1.9.8 71580 2novA 496 86.97 6ldhA 329 87.78 c.2.1.5,d.162.1.1 30161,42128 3gagA 206 88.96 3brjA 175 89.12 a.285.1.1 155511