# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2iqcA 174 2.804e-01 1facA 22 1.481e+00 j.13.1.1 46148 1oisA 221 1.562e+00 e.15.1.1 43267 1cfgA 23 1.767e+00 j.13.1.1 46149 3a32A 466 2.071e+00 1wi3A 72 2.141e+00 a.4.1.1 114660 3fs3A 198 2.969e+00 2iewA 259 3.516e+00 1qpxA 207 3.681e+00 1qpxA b.1.11.1 22318 b.7.2.1 23200 2rkhA 165 3.970e+00 2vhbA 138 4.444e+00 2vhbA a.1.1.2 15629 1wgxA 74 4.977e+00 a.4.1.3 114626 1ebmA 315 5.775e+00 1ebmA a.96.1.3 18751 d.129.1.2 41300 1lpqA 558 5.926e+00 a.2.8.1 74174 d.163.1.2 74175 e.15.1.1 74176 1qppA 208 5.961e+00 1qpxA b.1.11.1 22320 b.7.2.1 23202 3gokA 286 6.266e+00 1ej9A 484 6.507e+00 1a36A d.163.1.2 42172 e.15.1.1 43265 1n0lA 216 6.721e+00 b.1.11.1 79744 b.7.2.1 79745 1rrjA 566 7.340e+00 a.2.8.1 105078 d.163.1.2 105079 e.15.1.1 105080 1seuA 566 7.471e+00 a.2.8.1 118952 d.163.1.2 118953 e.15.1.1 118954 1ois 221 8.044e+00 1a36A 2z8aA 146 9.523e+00 1lwyA 315 1.013e+01 a.96.1.3 78285 d.129.1.2 78286 2cbpA 97 1.020e+01 b.6.1.1 22895 1a36A 545 1.093e+01 1a36A a.2.8.1 15715 d.163.1.2 42173 e.15.1.1 43266 2d5xA 142 1.117e+01 a.1.1.2 131282 1aym4 30 1.312e+01 3gc9A 336 1.364e+01 2aa1A 143 1.397e+01 a.1.1.2 126463 2qqpB 40 1.422e+01 1p6xA 334 1.511e+01 c.37.1.1 94195 1a35A 475 1.560e+01 1a36A d.163.1.2 42171 e.15.1.1 43264 2zs0D 146 1.651e+01 1jer 111 1.676e+01 2cbp 2olpA 152 1.734e+01 3g46A 147 1.752e+01 1r49A 549 1.876e+01 a.2.8.1 96983 d.163.1.2 96984 e.15.1.1 96985 2h8fA 143 1.909e+01 a.1.1.2 136239 3gouA 142 2.009e+01 2w72C 142 2.013e+01 3gfpA 181 2.033e+01 1irdA 142 2.072e+01 a.1.1.2 66286 1x9fA 148 2.101e+01 a.1.1.2 114983 1k1vA 42 2.150e+01 a.37.1.1 71999 2ad6A 572 2.156e+01 b.70.1.1 126568 2d2mD 146 2.163e+01 1wt9B 124 2.229e+01 d.169.1.1 121255 1hdsA 142 2.239e+01 1abwA a.1.1.2 15378 1babA 143 2.275e+01 1abwA a.1.1.2 15235 1x9fB 146 2.301e+01 a.1.1.2 114984 2zfoC 148 2.350e+01 1f56A 92 2.388e+01 2cbp b.6.1.1 22896 1hhnA 102 2.431e+01 1hhnA b.104.1.1 61043 3a0gA 140 2.434e+01 2w72A 142 2.463e+01 1j7yA 142 2.741e+01 a.1.1.2 66426 1cqxA 404 2.752e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 2zs0C 148 2.755e+01 1qojA 47 2.758e+01 1qojA a.2.9.1 15716 1a3oA 142 2.778e+01 1abwA a.1.1.2 15274 1a31A 459 2.794e+01 1a36A d.163.1.2 42170 e.15.1.1 43263 1qhiA 301 2.863e+01 1qhiA c.37.1.1 31860 2ki5A 301 2.863e+01 1qhiA c.37.1.1 31862 3d1kA 143 2.894e+01 a.1.1.2 157208 2d2mC 147 2.908e+01 1aj9A 142 2.935e+01 1abwA a.1.1.2 15332 1t5iA 160 3.004e+01 c.37.1.19 106450 3d1aA 142 3.025e+01 1ze3C 206 3.037e+01 b.1.11.1 124974 b.7.2.1 124975 2hjvA 159 3.040e+01 1a4fA 142 3.131e+01 1abwA a.1.1.2 15394 3sdhA 146 3.141e+01 3sdhA a.1.1.2 14984 1hq8A 124 3.161e+01 1b6e d.169.1.1 61127 2waxA 162 3.224e+01 3fhtA 393 3.393e+01 1x2mA 65 3.441e+01 a.4.1.1 121645 1x9uA 106 3.441e+01 2b8eA 247 3.529e+01 c.108.1.7 128068 d.220.1.1 128069 1e2kA 309 3.533e+01 1qhiA c.37.1.1 31854 1ws8A 105 3.564e+01 b.6.1.1 114843 1ceqA 305 3.608e+01 1ceqA c.2.1.5 30163 d.162.1.1 42130 1h9eA 57 3.641e+01 1h9eA a.140.1.1 60825 3bxjA 349 3.673e+01 1z2kA 109 3.687e+01 3h6gA 378 3.761e+01 3cy5A 142 3.779e+01 1wq6A 60 3.790e+01 1p5vA 192 3.977e+01 b.1.11.1 87812 b.7.2.1 87813