# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hq8A 123 1.54e+00 1b6e d.169.1.1 61127 1v64A 108 4.00e+00 a.21.1.1 108392 1urtA 248 5.07e+00 b.74.1.1 27963 2ok9A 121 5.40e+00 2ot2A 90 5.87e+00 b.40.14.1 149007 1xxsA 122 5.99e+00 1keqA 248 6.32e+00 b.74.1.1 72387 2ph4A 121 7.10e+00 2od4A 101 7.38e+00 d.58.4.20 148734 1kcgA 124 7.57e+00 d.169.1.1 68438 3l1aA 266 7.85e+00 2cghA 268 7.92e+00 1iiuA 174 8.00e+00 b.60.1.1 66151 1hyrA 137 8.34e+00 1b6e d.169.1.1 61413 1mpuA 138 8.43e+00 d.169.1.1 85040 1pc9A 121 8.56e+00 a.133.1.2 104107 3m3iA 225 9.91e+00 2fk4A 75 1.00e+01 g.90.1.1 147040 3gcqA 360 1.00e+01 3bszE 176 1.04e+01 1jydA 183 1.05e+01 b.60.1.1 84255 1rbpA 182 1.05e+01 b.60.1.1 27085 3fmzA 212 1.07e+01 3i3iA 121 1.17e+01 3iq3A 121 1.19e+01 2q2jA 121 1.19e+01 1qllA 121 1.20e+01 1poa a.133.1.2 19556 1mj4A 82 1.27e+01 d.120.1.1 79189 3isgA 251 1.30e+01 1m6kA 251 1.30e+01 e.3.1.1 78695 2itmA 484 1.30e+01 1y4lA 121 1.32e+01 a.133.1.2 122624 1gt91 357 1.35e+01 1okcA 297 1.35e+01 f.42.1.1 93248 1t1gA 364 1.39e+01 c.41.1.2 106246 3h55A 400 1.46e+01 1pa0A 121 1.52e+01 a.133.1.2 104097 1ppaA 121 1.62e+01 a.133.1.2 19550 1dmxA 248 1.67e+01 2cba b.74.1.1 27959 3a12A 444 1.72e+01 1gehA 444 1.72e+01 c.1.14.1 65181 d.58.9.1 65182 2zkrb 403 1.73e+01 3a13A 444 1.74e+01 3js8A 540 1.81e+01 1apjA 74 1.86e+01 g.23.1.1 44899 2o20A 332 1.87e+01 1s8iA 121 1.88e+01 a.133.1.2 98735 1ionA 243 1.88e+01 c.37.1.10 62633 1g3qA 237 1.98e+01 1hyqA c.37.1.10 60237 1t1eA 552 2.01e+01 c.41.1.2 106244 d.58.3.2 106245 2jl4A 213 2.01e+01 2v6kA 214 2.05e+01 3h0gH 125 2.11e+01 1t1iA 364 2.16e+01 c.41.1.2 106248 1pu6A 218 2.27e+01 a.96.1.5 95123 2ps7A 374 2.30e+01 2gbmA 84 2.31e+01 1yyqA 374 2.32e+01 1jfgA 374 2.33e+01 a.128.1.5 66636 2ps6A 374 2.34e+01 2aelA 374 2.35e+01 2ps5A 374 2.35e+01 3ciiG 121 2.36e+01 d.169.1.1 156676 3b7fA 394 2.37e+01 2icuA 229 2.39e+01 3eb5A 74 2.41e+01 3bdwA 123 2.41e+01 d.169.1.1 155161 1r3hA 260 2.42e+01 b.1.1.2 96911 d.19.1.1 96912 1xqoA 256 2.47e+01 a.96.1.6 115853 1fg4A 149 2.48e+01 1ewxA c.47.1.10 59814 1o6jA 150 2.49e+01 c.47.1.10 81089 1o81A 152 2.51e+01 c.47.1.10 81175 2it9A 127 2.55e+01 d.18.1.3 137634 1kiyA 374 2.58e+01 a.128.1.5 72555 3it8D 324 2.62e+01 1b6eA 128 2.63e+01 d.169.1.1 42326 1m4vA 204 2.66e+01 b.40.2.2 74459 d.15.6.1 74460 3i1kA 377 2.67e+01 2a0bA 125 2.67e+01 a.24.10.1 16630 2z8lA 208 2.68e+01 b.40.2.2 154209 d.15.6.1 154210 3kgwA 393 2.68e+01 3kgxA 393 2.68e+01 2iybE 65 2.72e+01 1siuA 364 2.73e+01 c.41.1.2 98891 3itnA 250 2.73e+01 1sioA 364 2.76e+01 c.41.1.2 98888 2fuqA 747 2.79e+01 3e80A 749 2.79e+01 2futA 748 2.79e+01 3e7jA 749 2.85e+01 2b61A 377 2.99e+01 c.69.1.40 146086 2pesA 295 3.04e+01 d.96.1.4 149445 d.96.1.4 149446 2h5iB 95 3.05e+01 3bk8A 301 3.06e+01 d.96.1.4 155342 d.96.1.4 155343 3gkoA 301 3.07e+01 1r4uA 301 3.07e+01 d.96.1.4 97047 d.96.1.4 97048 1wrrA 301 3.07e+01 d.96.1.4 121204 d.96.1.4 121205 2ibaA 302 3.07e+01 d.96.1.4 137178 d.96.1.4 137179 1zvkA 358 3.08e+01 2r61A 208 3.12e+01 b.40.2.2 151599 d.15.6.1 151600 1zvjA 364 3.15e+01 2wa0A 240 3.16e+01 1nmeB 92 3.18e+01 2e5kA 94 3.30e+01 2phkA 277 3.34e+01 1cdkA d.144.1.7 41637 1oc9A 152 3.36e+01 c.47.1.10 86797 3edqD 108 3.39e+01 1rhjB 110 3.40e+01 3ceuA 210 3.43e+01 3edqB 108 3.45e+01 1ql6A 298 3.47e+01 1cdkA d.144.1.7 41636 1gfwB 97 3.47e+01 1pauB 1rhkB 102 3.48e+01 1phkA 298 3.49e+01 d.144.1.7 41635 2dkoB 103 3.50e+01 2cjxB 103 3.54e+01 1s3eA 520 3.60e+01 c.3.1.2 98426 d.16.1.5 98427 2c72A 520 3.60e+01 c.3.1.2 130018 d.16.1.5 130019 2c73A 520 3.62e+01 c.3.1.2 130022 d.16.1.5 130023 3isaA 254 3.63e+01 3ghaA 202 3.64e+01 1e3dA 266 3.64e+01 2frvA e.19.1.1 59188 2c75A 520 3.67e+01 c.3.1.2 130026 d.16.1.5 130027 2c76A 520 3.67e+01 c.3.1.2 130030 d.16.1.5 130031 2di4A 238 3.71e+01 a.269.1.1 131522 1fqiA 147 3.83e+01 1agrE a.91.1.1 18542 2bk5A 520 3.86e+01 c.3.1.2 128656 d.16.1.5 128657 2dw4A 660 3.88e+01 a.4.1.18 146594 c.3.1.2 146595 d.16.1.5 146596 3ktfA 103 3.90e+01 2vo9A 179 3.90e+01 d.65.1.5 153362 2z3yA 662 3.95e+01 a.4.1.18 154024 c.3.1.2 154025 d.16.1.5 154026 2c6uA 122 3.96e+01 1ktbA 405 3.98e+01 b.71.1.1 72960 c.1.8.1 72961