PFRMAT SS
TARGET T0561
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0561.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4
METHOD
MODEL 1
V C 0.688
E C 0.596
K C 0.431
K C 0.383
K H 0.355
Y H 0.464
L H 0.483
D H 0.503
S H 0.630
E H 0.675
F H 0.784
L H 0.831
L H 0.845
H H 0.834
C H 0.746
I H 0.743
S C 0.519
A H 0.914
Q H 0.943
L H 0.965
L H 0.988
D H 0.984
M H 0.965
W H 0.993
K H 0.994
Q H 0.994
A H 0.986
R H 0.989
A H 0.992
R H 0.978
W H 0.981
L H 0.961
E H 0.942
L H 0.908
V H 0.849
G H 0.802
K H 0.892
E H 0.893
W H 0.906
A H 0.923
H H 0.933
M H 0.861
L H 0.803
A H 0.670
L H 0.447
N T 0.467
P T 0.505
E T 0.514
R T 0.448
K T 0.411
D C 0.427
F E 0.337
L E 0.451
W E 0.462
K T 0.391
N T 0.407
Q T 0.429
S C 0.452
E T 0.348
M C 0.373
N C 0.387
S H 0.347
A H 0.553
F H 0.618
F H 0.629
D H 0.595
L H 0.766
C H 0.877
E H 0.936
V H 0.949
G H 0.967
K H 0.984
Q H 0.980
V H 0.968
M H 0.967
L H 0.940
G H 0.865
L H 0.695
L H 0.498
G T 0.514
K T 0.425
E C 0.427
V C 0.515
A C 0.640
L C 0.743
P H 0.539
K H 0.720
E H 0.691
E H 0.810
Q H 0.892
A H 0.917
F H 0.977
W H 0.999
I H 0.999
M H 0.998
Y H 0.997
A H 0.993
V H 0.981
H H 0.853
L H 0.780
S H 0.697
A H 0.845
A H 0.886
C H 0.855
A H 0.816
E H 0.719
E H 0.610
L H 0.608
H C 0.431
M C 0.423
E T 0.342
V T 0.405
A T 0.375
M T 0.347
S C 0.300
L T 0.224
R E 0.263
K E 0.369
L E 0.348
N E 0.498
V E 0.671
K E 0.750
L E 0.637
K E 0.343
D T 0.440
F T 0.448
N T 0.514
F T 0.534
G T 0.461
G H 0.369
T H 0.361
R H 0.484
Y H 0.458
F T 0.371
K T 0.508
D T 0.632
M C 0.452
P C 0.612
P H 0.624
E H 0.703
E H 0.770
K H 0.718
K H 0.829
R H 0.784
R H 0.755
M H 0.807
E H 0.818
R H 0.847
K H 0.861
Q H 0.886
R H 0.866
I H 0.963
E H 0.963
E H 0.951
A H 0.942
R H 0.905
R H 0.848
H H 0.737
G C 0.529
M C 0.775
P C 0.968
END