# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2j1dG 483 3.51e-01 2v6kA 214 3.59e-01 3fvyA 728 4.85e-01 1yrbA 262 7.68e-01 c.37.1.10 123915 2g47A 990 1.36e+00 1glqA 209 1.38e+00 1pgtA a.45.1.1 17588 c.47.1.5 32882 1u5tA 233 1.56e+00 a.4.5.54 107684 a.4.5.54 107685 1zeeA 403 1.89e+00 a.266.1.2 124981 3d7eO 505 2.45e+00 3ky9A 587 2.64e+00 3fd9A 256 2.66e+00 3kmnA 209 3.10e+00 1py5A 326 3.30e+00 d.144.1.7 104389 1lbkA 208 3.48e+00 a.45.1.1 73809 c.47.1.5 73810 17gsA 210 3.52e+00 1pgtA a.45.1.1 17524 c.47.1.5 32818 1xqoA 256 3.60e+00 a.96.1.6 115853 2a2rA 210 3.76e+00 a.45.1.1 126058 c.47.1.5 126059 1aqwA 209 3.96e+00 1pgtA a.45.1.1 17517 c.47.1.5 32811 1vjyA 303 4.22e+00 d.144.1.7 108633 3hmmA 303 4.25e+00 1vbgA 876 4.45e+00 c.1.12.2 119951 c.8.1.1 119952 d.142.1.5 119953 3bs4A 260 4.56e+00 2vdxA 373 4.76e+00 2rccA 346 5.18e+00 1bsmA 201 5.59e+00 1avmA a.2.11.1 15780 d.44.1.1 38743 1jalA 363 5.60e+00 c.37.1.8 84138 d.15.10.2 84139 2idxA 196 5.61e+00 1avmA 201 5.61e+00 1avmA a.2.11.1 15782 d.44.1.1 38745 3f7cA 200 6.11e+00 2r1fA 270 6.24e+00 1xxsA 122 6.48e+00 3cwwA 990 6.63e+00 3e4aA 1019 6.65e+00 6gsvA 217 6.77e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1pgtA 210 7.07e+00 1pgtA a.45.1.1 17515 c.47.1.5 32809 1b6cB 342 7.11e+00 1b6cB d.144.1.7 41673 2wbyA 990 7.29e+00 3e4zA 990 7.30e+00 3euhC 234 7.33e+00 2wotA 306 7.33e+00 3h46O 506 7.40e+00 2hsbA 126 7.60e+00 2hlyA 207 7.69e+00 d.3.1.19 147310 1yuzA 202 7.82e+00 a.25.1.1 124077 g.41.5.1 124078 3f1xA 310 8.49e+00 1mn8A 100 8.83e+00 a.61.1.6 79318 2hm2Q 89 9.09e+00 3h3nO 506 9.39e+00 2pg0A 385 9.75e+00 1vd5A 377 1.00e+01 a.102.1.7 108518 2ahfA 377 1.04e+01 1mdwA 328 1.11e+01 d.3.1.3 84934 1cojA 212 1.11e+01 1avmA a.2.11.1 15737 d.44.1.1 38734 3h9rA 330 1.12e+01 3f75P 106 1.15e+01 1oglA 283 1.15e+01 a.204.1.1 92922 1h5zA 455 1.16e+01 a.104.1.1 90622 1i5nA 146 1.21e+01 1i5nA a.24.10.3 61805 3iq3A 121 1.22e+01 1adjA 421 1.22e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 2hzgA 401 1.23e+01 3hv2A 153 1.28e+01 3gfaA 198 1.29e+01 3ledA 392 1.29e+01 1y4lA 121 1.33e+01 a.133.1.2 122624 3ctvA 110 1.36e+01 3mmzA 176 1.36e+01 3hhdA 965 1.40e+01 2bjoA 136 1.47e+01 1eu8A 409 1.49e+01 1eu8A c.94.1.1 59502 3d7jA 152 1.51e+01 3flcO 518 1.54e+01 2hbvA 334 1.55e+01 c.1.9.15 136320 2dobA 83 1.55e+01 1h4vB 421 1.58e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 3hyhA 275 1.62e+01 2jfkA 433 1.63e+01 3ignA 177 1.64e+01 2eyqA 1151 1.69e+01 b.34.18.1 132590 c.37.1.19 132591 c.37.1.19 132592 c.37.1.19 132593 c.37.1.19 132594 d.315.1.1 132595 1wy1A 172 1.70e+01 1clxA 347 1.71e+01 1taxA c.1.8.3 28899 1hfoA 113 1.79e+01 d.80.1.3 61006 1o6lA 337 1.79e+01 d.144.1.7 81092 1dceB 331 1.81e+01 1dceB a.102.4.3 18872 1pw4A 451 1.81e+01 f.38.1.1 95198 2nwbA 400 1.83e+01 2q2jA 121 1.84e+01 2whxA 618 1.85e+01 1b4pA 217 1.86e+01 a.45.1.1 83158 c.47.1.5 83159 1r8sE 203 1.87e+01 a.118.3.1 97248 1vmbA 140 1.87e+01 d.58.14.1 113672 1qhlA 227 1.90e+01 1qhlA c.37.1.12 32382 3clmA 352 1.92e+01 2of3A 266 1.95e+01 2x64A 207 1.96e+01 1p0yA 444 2.00e+01 a.166.1.1 87654 b.85.7.3 87655 1fewA 184 2.03e+01 1fewA a.7.4.1 16334 3bniA 229 2.03e+01 2d29A 387 2.03e+01 a.29.3.1 131157 e.6.1.1 131158 2olmA 140 2.05e+01 2jlqA 451 2.07e+01 2f6lA 166 2.07e+01 a.130.1.4 133049 2fp1A 166 2.09e+01 a.130.1.4 133891 1lldA 319 2.10e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1ru0A 105 2.13e+01 d.74.1.1 111937 1guxA 218 2.13e+01 1guxA a.74.1.3 18388 1s8iA 121 2.14e+01 a.133.1.2 98735 1uzcA 71 2.19e+01 a.159.2.1 100222 1r9dA 787 2.20e+01 c.7.1.1 104865 1kyhA 276 2.22e+01 c.72.1.4 73222 1w32A 348 2.25e+01 c.1.8.3 114120 2v95A 371 2.27e+01 1tr0A 108 2.29e+01 d.58.4.4 107261 1vapA 123 2.30e+01 1poa a.133.1.2 19548 3dssB 331 2.31e+01 a.102.4.3 157841 2hw2A 143 2.31e+01 2wauA 302 2.31e+01 1rp3A 239 2.33e+01 a.4.13.1 97678 a.4.13.2 97679 a.177.1.1 97680 3isgA 251 2.39e+01 2wtgA 159 2.42e+01 1ea1A 455 2.42e+01 1ea1A a.104.1.1 18970 2bsjA 133 2.48e+01 3i4fA 264 2.51e+01 2wvvA 450 2.53e+01 3g11A 427 2.53e+01 1vlbA 907 2.53e+01 a.56.1.1 108739 d.15.4.2 108740 d.41.1.1 108741 d.133.1.1 108742 3m1gA 362 2.55e+01 2b5tI 432 2.58e+01 e.1.1.1 127905 3ip4B 483 2.62e+01 1gm7A 209 2.62e+01 d.153.1.2 65302 2j07A 420 2.64e+01 a.99.1.1 137891 c.28.1.1 137892 2vjvA 159 2.70e+01 d.58.57.1 153201 3gi8C 444 2.73e+01 2ou6A 190 2.78e+01 a.213.1.2 149020 3brsA 289 2.85e+01 1heiA 451 2.86e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1syyA 346 2.90e+01 a.25.1.2 106126 1aoa 275 2.93e+01 1aoa 1vasA 137 2.93e+01 2end a.18.1.1 16404 3ho9A 427 3.01e+01 3d33A 108 3.02e+01 2g5cA 281 3.02e+01 a.100.1.12 134646 c.2.1.6 134647 2welA 327 3.07e+01 1okcA 297 3.08e+01 f.42.1.1 93248 3a0gA 141 3.13e+01 1evsA 187 3.13e+01 1evsA a.26.1.1 16845 2b61A 377 3.13e+01 c.69.1.40 146086 1y1pA 342 3.17e+01 c.2.1.2 122550 1a4yA 460 3.25e+01 1a4yA c.10.1.1 30852 2aaxA 275 3.37e+01 1x9fA 151 3.42e+01 a.1.1.2 114983 1n82A 331 3.44e+01 c.1.8.3 91703 2q8xA 331 3.44e+01 1lc5A 364 3.45e+01 c.67.1.1 73827 2v57A 190 3.53e+01 1nktA 922 3.53e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1qgrA 876 3.54e+01 1qgrA a.118.1.1 19119 2ps2A 371 3.56e+01 1nd4A 264 3.58e+01 d.144.1.6 91815 2jbrA 422 3.58e+01 3kcgI 432 3.65e+01 1j77A 209 3.80e+01 1j77A a.132.1.2 62674 1uwsA 489 3.82e+01 c.1.8.4 108073 2j5bA 348 3.84e+01 2cj4A 150 3.88e+01 a.29.6.1 130518 3b9fI 395 3.89e+01 1u14A 172 3.89e+01 c.51.4.3 107579 2dc5A 231 3.89e+01