Best Alignments for T0558

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1nr0A	9.7013e-23	1nr0A/T0558-1nr0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1 b.69.4.1
2gnqA	1.2232e-21	2gnqA/T0558-2gnqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3emhA	1.6710e-21	3emhA/T0558-3emhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qc5A	2.9060e-21	2qc5A/T0558-2qc5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bcjB	6.6370e-21	2bcjB/T0558-2bcjB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1
2h14A	7.1821e-21	2h14A/T0558-2h14A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gotB	1.3477e-20	1gotB/T0558-1gotB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1
1gxrA	1.5772e-20	1gxrA/T0558-1gxrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1
2pbiB	2.0327e-20	2pbiB/T0558-2pbiB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r5mA	2.4182e-20	1r5mA/T0558-1r5mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pguA	2.5812e-20	1pguA/T0558-1pguA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1 b.69.4.1
2z2nA	3.4109e-20	2z2nA/T0558-2z2nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3ei4B	3.4950e-20	3ei4B/T0558-3ei4B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3hxjA	3.5935e-20	3hxjA/T0558-3hxjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1a0rB	5.5023e-20	1a0rB/T0558-1a0rB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.4.1
2oajA	5.5099e-20	2oajA/T0558-2oajA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3frxA	7.1793e-20	3frxA/T0558-3frxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fvzA	9.0234e-20	3fvzA/T0558-3fvzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fm0A	1.0473e-19	3fm0A/T0558-3fm0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3i2nA	1.6229e-19	3i2nA/T0558-3i2nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001