# List of top-scoring protein chains for T0558.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hxjA 330 1.00e-05 2gnqA 336 1.15e-05 2h9lA 329 1.15e-05 3emhA 318 1.16e-05 2h14A 317 1.16e-05 2o9kA 313 1.17e-05 2h6nA 312 1.17e-05 2g9aA 311 1.17e-05 2g99A 308 1.17e-05 2cnxA 315 1.92e-05 2co0A 315 2.36e-05 1q7fA 286 2.46e-05 b.68.9.1 96036 2zkqa 317 0.000270 1erjA 393 0.000475 b.69.4.1 27660 1gotB 340 0.000729 b.69.4.1 27648 1a0rB 340 0.000729 b.69.4.1 27658 1tbgA 340 0.000824 b.69.4.1 27649 2bcjB 340 0.000824 b.69.4.1 128289 3dm0A 694 0.001600 1vyhC 410 0.003139 b.69.4.1 144534 3fm0A 345 0.005745 2ovrB 445 0.009670 a.158.1.1,b.69.4.1 145735,145736 2pbiB 354 0.01201 3frxA 319 0.02606 1trjA 314 0.02626 3jyvR 313 0.02627 1rwiA 270 0.03989 b.68.9.1 97987 1gxrA 337 0.09577 b.69.4.1 70722 1nr0A 611 0.1541 b.69.4.1,b.69.4.1 86078,86079 3fvzA 329 0.1689 1nexB 464 0.3324 a.158.1.1,b.69.4.1 80443,80444 2aq5A 402 0.4796 1k8kC 372 0.4994 b.69.4.1 68308 3dxkC 372 0.5577 1l0qA 391 0.6425 b.1.3.1,b.69.2.3 77644,77645 3bg1A 316 0.8269 1kv9A 668 1.089 a.3.1.6,b.70.1.1 73056,73057 2hesX 330 1.236 3acpA 417 1.247 1yiqA 689 1.313 3ei4B 436 1.414 3jrpA 379 1.532 1r5mA 425 1.688 2pm6B 297 1.812 3jroA 753 1.987 2pm7B 297 2.259 2z2pA 299 2.358 2z2nA 299 3.116 1p22A 435 3.855 a.158.1.1,b.69.4.1 87715,87716 1ri6A 343 4.030 b.69.11.1 97503 3e5zA 296 4.072 3dr2A 305 5.173 2dg1A 333 7.227 b.68.6.1 131493 1flgA 582 7.511 b.70.1.1 27682 2dsoA 333 7.523 b.68.6.1 131689 3bwsA 433 7.751 2ad6A 571 7.858 b.70.1.1 126568 1g72A 573 7.863 b.70.1.1 27680 3fgbA 361 9.339 1s4uX 407 11.63 b.69.4.1 112027 3c99A 432 11.64 1sq9A 397 11.68 b.69.4.1 105889 3hrpA 409 11.82 1n6eA 1071 14.08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 14.20 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3dasA 347 19.14 3f3fA 351 19.35 1h3iA 293 19.79 b.76.2.1,b.85.7.1 76635,76636 3eweA 349 19.81 2p9wA 334 21.01 1jmxB 349 23.52 b.69.2.2 66906 3gfcA 425 24.54 3dwlC 377 26.30 3hliA 314 26.83 3hlhA 314 28.18 1mt6A 280 28.28 b.76.2.1,b.85.7.1 79446,79447 3ijcA 365 30.40 3i2nA 357 32.69 3jzhA 402 33.99 3cfsB 414 34.49 3k26A 366 34.73 3iiwA 365 34.79 2qxvA 361 35.08 3g4eA 297 38.03 2p4oA 306 41.79 b.68.6.3 149216 3ei3B 383 45.10 1pbyB 337 45.49 b.69.2.2 94422 3ettA 571 47.09 1n6cA 297 49.85 b.76.2.1,b.85.7.1 80123,80124 2hz6A 369 52.56 1pguA 615 53.08 b.69.4.1,b.69.4.1 88069,88070 2gvxA 314 58.77 3elqA 571 60.07 1kb0A 677 60.80 a.3.1.6,b.70.1.1 68378,68379 2iavA 312 68.58 2iaqA 312 70.47 2iaoA 312 71.07 2iapA 312 71.43 1pjxA 314 71.49 b.68.6.1 104167 2iaxA 312 72.80 2gvuA 314 75.37 2cn3A 737 76.16 2iauA 312 76.75 2ghsA 326 78.11 b.68.6.1 135209 2iasA 312 85.00 2iawA 312 87.83