# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 3.59e-12 2h14A 317 5.75e-12 1gxrA 337 1.70e-11 b.69.4.1 70722 2gnqA 336 1.92e-11 1a0rB 340 2.50e-11 b.69.4.1 27658 3hxjA 330 3.05e-11 1gotB 340 3.61e-11 b.69.4.1 27648 2bcjB 340 4.68e-11 b.69.4.1 128289 1r5mA 425 4.86e-11 3dxkC 372 5.59e-11 1q7fA 286 5.86e-11 b.68.9.1 96036 2pbiB 354 6.35e-11 1nr0A 611 6.79e-11 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 9.51e-11 3acpA 417 2.22e-10 2z2nA 299 3.15e-10 2qc5A 300 3.29e-10 3ei4B 436 3.78e-10 1k8kC 372 4.59e-10 b.69.4.1 68308 3fvzA 329 5.58e-10 3greA 437 6.05e-10 1nexB 464 6.26e-10 a.158.1.1,b.69.4.1 80443,80444 3fm0A 345 6.42e-10 1yfqA 342 9.09e-10 b.69.4.2 116680 1pguA 615 9.83e-10 b.69.4.1,b.69.4.1 88069,88070 2ovrB 445 1.64e-09 a.158.1.1,b.69.4.1 145735,145736 3ei3B 383 2.10e-09 2p4oA 306 2.30e-09 b.68.6.3 149216 1u4cA 349 2.68e-09 b.69.4.2 107666 1l0qA 391 3.47e-09 b.1.3.1,b.69.2.3 77644,77645 3dwlC 377 3.73e-09 3i2nA 357 4.14e-09 3k26A 366 4.50e-09 2oitA 434 5.98e-09 3elqA 571 7.80e-09 3iiwA 365 8.58e-09 2hesX 330 1.13e-08 1s4uX 407 1.15e-08 b.69.4.1 112027 3bwsA 433 1.50e-08 2qxvA 361 1.51e-08 1rwiA 270 3.42e-08 b.68.9.1 97987 3hrpA 409 4.25e-08 2aq5A 402 6.22e-08 2pm7B 297 6.86e-08 2vduB 450 9.22e-08 1p22A 435 1.16e-07 a.158.1.1,b.69.4.1 87715,87716 3dw8B 447 1.25e-07 1k32A 1045 1.66e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3f3fA 351 1.71e-07 1sq9A 397 2.81e-07 b.69.4.1 105889 2w18A 356 3.15e-07 1ri6A 343 3.16e-07 b.69.11.1 97503 3c99A 432 7.98e-07 2hqsA 415 1.22e-06 b.68.4.1,c.51.2.1 136662,136663 2dg1A 333 1.24e-06 b.68.6.1 131493 3e5zA 296 1.27e-06 3cfsB 414 1.61e-06 2ojhA 297 2.05e-06 1pbyB 337 2.26e-06 b.69.2.2 94422 2oajA 902 3.19e-06 3gfcA 425 4.25e-06 1n6eA 1071 4.31e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1kb0A 677 5.84e-06 a.3.1.6,b.70.1.1 68378,68379 3i1cA 324 6.59e-06 3li4A 314 1.06e-05 3g4eA 297 1.13e-05 1yiqA 689 1.21e-05 3li5A 314 1.48e-05 3kyaA 496 2.90e-05 2gc7A 386 3.81e-05 b.69.2.1 134954 3li3A 314 4.29e-05 1lrwA 600 4.31e-05 b.70.1.1 91111 1kv9A 668 5.34e-05 a.3.1.6,b.70.1.1 73056,73057 2ad6A 571 5.84e-05 b.70.1.1 126568 3dr2A 305 7.28e-05 2ghsA 326 0.000121 b.68.6.1 135209 1pjxA 314 0.000123 b.68.6.1 104167 1g72A 573 0.000136 b.70.1.1 27680 1jmxB 349 0.000149 b.69.2.2 66906 1w6sA 599 0.000172 b.70.1.1 114284 3fgbA 361 0.000229 2d5lA 706 0.000446 3hfqA 347 0.000596 2p9wA 334 0.001314 2z3zA 706 0.001519 3dsmA 328 0.001582 2be1A 339 0.005048 1v04A 355 0.006596 b.68.6.2 100240 3hacA 728 0.007020 1yr2A 741 0.007736 1orvA 728 0.008132 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 0.008756 b.70.3.1,c.69.1.24 115251,115252 3g0bA 740 0.009253 2qe8A 343 0.01029 3c5mA 396 0.01317 2qr5A 582 0.02437 b.69.7.2,c.69.1.33 151278,151279 1o6gA 710 0.02736 b.69.7.1,c.69.1.4 81087,81088 1e8nA 710 0.03369 b.69.7.1,c.69.1.4 27675,34643 2ww5A 468 0.03633 2iwaA 266 0.04197 1jofA 365 0.04590 b.69.10.1 71775 2iaaA 390 0.06913 2bklA 695 0.07272 3c75H 426 0.09683 2oizA 361 0.1251 2b5nA 323 0.1423 2gopA 347 0.1431 1bfgA 146 0.1834 b.42.1.1 25485 2hu5A 582 0.2455 b.69.7.2,c.69.1.33 136763,136764 2agyA 361 0.2590 2iwkA 642 0.2630 1h2xA 710 0.2741 b.69.7.1,c.69.1.4 76598,76599 2hyxA 352 0.2768 3dasA 347 0.3333 1xipA 388 0.4470 b.69.14.1 115360 2g8sA 353 0.4815 2ismA 352 0.5064 3e0cA 1140 0.5173 1h2wA 710 0.6344 b.69.7.1,c.69.1.4 76596,76597 1cruA 454 0.8375 b.68.2.1 27617 2fluX 308 0.9323 b.68.11.1 133750 2zwaA 695 0.9879 3ii7A 306 1.441 1npeA 267 1.497 b.68.5.1 92032 3dohA 380 1.675 2wozA 318 1.699 3ei3A 1158 1.910 2fp8A 322 2.575 1x2jA 316 2.592 b.68.11.1 121643 1w8oA 601 2.619 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2vpjA 301 2.777 3hihA 223 2.879 2jd4A 383 3.404 2eceA 462 3.548 1sqjA 789 3.672 b.69.13.1,b.69.13.1 105918,105919 2v05A 311 3.951 3llpA 493 5.207 2j04B 524 5.539 1barA 140 5.939 b.42.1.1 25504 3b7fA 394 6.112 3c12A 138 6.504 1wcqA 601 6.525 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 3ah2A 288 6.891 1mt6A 280 6.898 b.76.2.1,b.85.7.1 79446,79447 2bibA 547 6.997 b.109.1.1,d.157.1.8 128581,128582 1utcA 363 7.064 a.118.1.4,b.69.6.1 99914,99915 2pooA 355 7.684 b.68.3.1 27626 2w38A 438 8.735 2cn3A 737 9.114 2biwA 490 9.419 1h6lA 353 11.20 b.68.3.1 60687 1r17A 343 11.53 b.2.3.4,b.2.3.4 96796,96797 1ms9A 648 12.30 b.29.1.15,b.68.1.1 85088,85089 1zgkA 308 12.44 b.68.11.1 145998 2jkbA 686 13.36 2qpzA 103 13.37 2uxyA 341 13.47 2rq9A 143 13.56 2i7fA 108 13.98 2e4qA 109 14.02 2fdbM 164 16.09 b.42.1.1 145162 1f5fA 205 16.16 b.29.1.4 24222 2wjsA 608 16.20 2j8gA 339 16.22 b.109.1.1,c.1.8.8 147915,147916 2sliA 679 16.40 b.29.1.9,b.68.1.1 24274,27611 1n1tA 641 16.61 b.29.1.15,b.68.1.1 79821,79822 3fvhA 237 16.75 3g6jA 644 16.93 1iwlA 182 17.67 b.125.1.1 83757 2zuxA 591 18.71 2zuyA 620 18.81 1k3iA 656 19.36 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3h6jA 438 19.61 2ebsA 789 20.55 b.69.13.1,b.69.13.1 146772,146773 2aukA 190 21.91 3f6kA 685 22.69 3dqyA 106 23.45 3c8cA 240 24.32 3hikA 237 24.81 1h3iA 293 25.00 b.76.2.1,b.85.7.1 76635,76636 2p25A 126 25.64 1suuA 312 28.01 b.68.10.1 99006 1fwxA 595 28.49 b.6.1.4,b.69.3.1 60069,60070 1ybiA 288 30.40 2w5nA 367 31.05 1f89A 291 33.78 d.160.1.1 64988 1zboA 210 35.31 b.122.1.10 124859 2bv4A 113 37.63 2p39A 155 38.61 2wiiA 645 38.67 4fgf 146 39.32 1wp5A 323 39.87 b.68.10.1 114780 1uf5A 303 40.83 d.160.1.2 107808 2de6D 115 41.18 2chhA 114 41.21 b.115.1.1 130471 2bmoA 447 41.65 b.33.1.2,d.129.3.3 128804,128805 2z1pA 348 42.74 2v2gA 233 42.88 3hkxA 283 43.52 2w20A 471 43.92 3iolA 126 44.75 2yugA 155 45.25 2madH 373 46.16 b.69.2.1 27639 2uvkA 357 47.75 2ggtA 164 48.76 c.47.1.10 135156 1rieA 129 51.30 b.33.1.1 24427 2w7qA 204 51.83 1rg8A 146 53.07 b.42.1.1 111801 1h09A 338 56.17 b.109.1.1,c.1.8.8 83420,83421 2f6eA 127 57.24 1zvtA 256 61.07 3kstA 306 61.89 3hn3A 613 65.64 3dalA 196 65.80 3gc3B 363 65.85 1mdaH 368 66.00 b.69.2.1 27637 3d1gA 366 66.12 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 1umwA 237 67.31 d.223.1.2,d.223.1.2 99631,99632 3cnwA 148 67.64 d.129.3.8 156848 1jchA 551 68.09 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 2vhhA 405 68.54 2vnlA 151 69.82 2rliA 171 70.83 2w1kA 252 76.53 2exnA 136 76.87 b.165.1.1 132562 2a74A 643 77.12 2qkhA 135 77.15 3silA 379 77.80 b.68.1.1 27542 3l6vA 370 78.66 1uypA 432 79.72 b.29.1.19,b.67.2.3 100176,100177 1itwA 741 79.89 c.77.1.2 76793 2afgA 140 80.97 b.42.1.1 25514 1hx0A 496 81.51 b.71.1.1,c.1.8.1 61346,61347 2c1fA 234 81.91 1rfsA 139 82.94 b.33.1.1 24434 1jiwI 106 88.23 b.61.2.1 63078 3c5tA 122 88.62 2dx0A 138 88.67