# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 7.64e-15 2h14A 317 1.05e-14 3hxjA 330 2.54e-14 2z2nA 299 2.60e-14 2gnqA 336 3.11e-14 2qc5A 300 4.02e-14 1q7fA 286 5.87e-14 b.68.9.1 96036 1gxrA 337 1.41e-13 b.69.4.1 70722 1gotB 340 1.73e-13 b.69.4.1 27648 1nr0A 611 1.86e-13 b.69.4.1,b.69.4.1 86078,86079 2bcjB 340 5.27e-13 b.69.4.1 128289 3frxA 319 6.18e-13 1r5mA 425 6.64e-13 1a0rB 340 7.55e-13 b.69.4.1 27658 3dxkC 372 8.88e-13 1l0qA 391 8.93e-13 b.1.3.1,b.69.2.3 77644,77645 2pbiB 354 1.14e-12 3acpA 417 4.05e-12 1k8kC 372 5.61e-12 b.69.4.1 68308 3fvzA 329 6.06e-12 3ei4B 436 1.22e-11 1rwiA 270 2.39e-11 b.68.9.1 97987 1pguA 615 2.59e-11 b.69.4.1,b.69.4.1 88069,88070 3fm0A 345 2.67e-11 3greA 437 3.15e-11 3bwsA 433 4.26e-11 3ei3B 383 5.49e-11 1yfqA 342 5.64e-11 b.69.4.2 116680 2ovrB 445 7.19e-11 a.158.1.1,b.69.4.1 145735,145736 2p4oA 306 9.78e-11 b.68.6.3 149216 1nexB 464 1.26e-10 a.158.1.1,b.69.4.1 80443,80444 3elqA 571 1.68e-10 3dwlC 377 2.48e-10 3k26A 366 2.63e-10 1u4cA 349 3.26e-10 b.69.4.2 107666 3iiwA 365 4.24e-10 3hrpA 409 7.86e-10 2qxvA 361 1.09e-09 1s4uX 407 1.48e-09 b.69.4.1 112027 3i2nA 357 1.50e-09 1n6eA 1071 2.41e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 2.66e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2hesX 330 3.15e-09 3e5zA 296 3.25e-09 3dw8B 447 3.31e-09 2w18A 356 3.93e-09 2aq5A 402 5.11e-09 2oitA 434 5.32e-09 2pm7B 297 1.62e-08 1ri6A 343 2.15e-08 b.69.11.1 97503 1p22A 435 2.37e-08 a.158.1.1,b.69.4.1 87715,87716 2vduB 450 3.20e-08 1pbyB 337 3.86e-08 b.69.2.2 94422 2ojhA 297 4.17e-08 2hqsA 415 5.72e-08 b.68.4.1,c.51.2.1 136662,136663 1sq9A 397 5.85e-08 b.69.4.1 105889 3i1cA 324 6.47e-08 1yiqA 689 8.36e-08 1kb0A 677 1.13e-07 a.3.1.6,b.70.1.1 68378,68379 2dg1A 333 1.17e-07 b.68.6.1 131493 3li4A 314 1.93e-07 3f3fA 351 2.14e-07 3c99A 432 3.94e-07 2oajA 902 4.58e-07 3g4eA 297 4.86e-07 3dr2A 305 4.90e-07 2gc7A 386 6.72e-07 b.69.2.1 134954 1kv9A 668 6.88e-07 a.3.1.6,b.70.1.1 73056,73057 2ghsA 326 6.90e-07 b.68.6.1 135209 3cfsB 414 8.71e-07 3gfcA 425 1.05e-06 3li5A 314 1.23e-06 1pjxA 314 1.66e-06 b.68.6.1 104167 1g72A 573 1.91e-06 b.70.1.1 27680 3li3A 314 2.55e-06 1lrwA 600 4.10e-06 b.70.1.1 91111 3kyaA 496 1.09e-05 1jmxB 349 1.16e-05 b.69.2.2 66906 2ad6A 571 1.45e-05 b.70.1.1 126568 1w6sA 599 2.96e-05 b.70.1.1 114284 3fgbA 361 5.28e-05 3hfqA 347 0.000128 2p9wA 334 0.000165 2d5lA 706 0.000472 2be1A 339 0.000545 3dsmA 328 0.000574 2z3zA 706 0.000950 2oizA 361 0.001061 2qr5A 582 0.002383 b.69.7.2,c.69.1.33 151278,151279 2qe8A 343 0.002754 2iwaA 266 0.003750 1yr2A 741 0.004531 1v04A 355 0.006047 b.68.6.2 100240 1orvA 728 0.006285 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 0.007535 b.70.3.1,c.69.1.24 115251,115252 3c5mA 396 0.007642 1npeA 267 0.008152 b.68.5.1 92032 2gopA 347 0.01051 2iaaA 390 0.01129 2b5nA 323 0.01290 2bklA 695 0.01772 3c75H 426 0.02247 1o6gA 710 0.02247 b.69.7.1,c.69.1.4 81087,81088 2ww5A 468 0.02295 2hu5A 582 0.02461 b.69.7.2,c.69.1.33 136763,136764 2agyA 361 0.02540 1e8nA 710 0.02741 b.69.7.1,c.69.1.4 27675,34643 1bfgA 146 0.02926 b.42.1.1 25485 1jofA 365 0.02964 b.69.10.1 71775 3hacA 728 0.03290 3g0bA 740 0.03908 3ei3A 1158 0.07212 2iwkA 642 0.07852 1h2xA 710 0.09092 b.69.7.1,c.69.1.4 76598,76599 2ismA 352 0.1308 3dasA 347 0.1691 1h2wA 710 0.2102 b.69.7.1,c.69.1.4 76596,76597 3gc3B 363 0.2297 3e0cA 1140 0.2792 2v05A 311 0.2804 3llpA 493 0.2862 2fp8A 322 0.3347 2bibA 547 0.4516 b.109.1.1,d.157.1.8 128581,128582 1utcA 363 0.4865 a.118.1.4,b.69.6.1 99914,99915 2fluX 308 0.4935 b.68.11.1 133750 3ah2A 288 0.5393 1x2jA 316 0.6816 b.68.11.1 121643 1xipA 388 0.7201 b.69.14.1 115360 2hyxA 352 0.9706 1suuA 312 1.022 b.68.10.1 99006 2jkbA 686 1.107 2dpfA 115 1.152 2aukA 190 1.339 2rq9A 143 1.445 2yugA 155 1.568 2e4qA 109 1.628 2g8sA 353 2.268 2j8gA 339 2.425 b.109.1.1,c.1.8.8 147915,147916 2vw2A 697 2.537 3dzwA 109 2.562 2qpzA 103 3.148 3ii7A 306 3.174 3c8cA 240 3.281 1afcA 140 3.650 b.42.1.1 25506 2eceA 462 3.769 3hihA 223 3.999 1m2tB 263 4.023 b.42.2.1,b.42.2.1 84762,84763 2vpjA 301 4.090 2sliA 679 4.166 b.29.1.9,b.68.1.1 24274,27611 1barA 140 4.378 b.42.1.1 25504 3c12A 138 4.617 1cruA 454 4.651 b.68.2.1 27617 1r17A 343 4.690 b.2.3.4,b.2.3.4 96796,96797 2uxyA 341 5.096 2jd4A 383 5.964 1qxmA 300 6.020 b.42.2.1,b.42.2.1 96533,96534 3a0eA 110 6.055 1w8oA 601 6.140 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1n1tA 641 6.478 b.29.1.15,b.68.1.1 79821,79822 1sqjA 789 7.776 b.69.13.1,b.69.13.1 105918,105919 1h8gA 95 9.722 b.109.1.1 65735 3l6vA 370 9.836 1mt6A 280 10.00 b.76.2.1,b.85.7.1 79446,79447 1wcqA 601 10.25 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2j04B 524 10.63 2zuxA 591 10.98 2wozA 318 11.19 1at0A 145 11.26 b.86.1.1 28374 2vnlA 151 11.40 2f6eA 127 11.46 2h0bA 184 11.69 3fosA 214 11.87 3dqyA 106 11.94 1ms9A 648 12.63 b.29.1.15,b.68.1.1 85088,85089 1o7nA 449 12.74 b.33.1.2,d.129.3.3 81162,81163 1k3xA 262 12.95 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 3ld7A 101 13.26 1h30A 422 14.11 b.29.1.4,b.29.1.4 76604,76605 1zgkA 308 14.21 b.68.11.1 145998 1zi0A 307 14.96 3hwuA 147 15.07 2i7fA 108 15.62 3h6jA 438 15.85 1h09A 338 16.06 b.109.1.1,c.1.8.8 83420,83421 1fwxA 595 16.52 b.6.1.4,b.69.3.1 60069,60070 1jpcA 109 16.95 b.78.1.1 27986 3l48A 94 17.50 3lv4A 456 17.93 2cn3A 737 18.63 2fdbM 164 18.76 b.42.1.1 145162 2madH 373 18.89 b.69.2.1 27639 1f89A 291 19.02 d.160.1.1 64988 4fgf 146 19.09 2ebsA 789 19.14 b.69.13.1,b.69.13.1 146772,146773 2w38A 438 19.27 1f5fA 205 19.78 b.29.1.4 24222 2biwA 490 20.01 2kppA 114 20.13 3hkxA 283 20.31 1wp5A 323 20.94 b.68.10.1 114780 3fvhA 237 21.19 2e9qA 459 21.25 1zboA 210 21.53 b.122.1.10 124859 3b7fA 394 22.04 3kbgA 213 22.96 2zuyA 620 23.03 2ggtA 164 23.16 c.47.1.10 135156 2p25A 126 23.44 2dyuA 334 24.35 1uf5A 303 25.12 d.160.1.2 107808 2vxrA 482 25.70 1iwlA 182 27.46 b.125.1.1 83757 2wg4B 457 28.41 1gvmA 136 29.18 b.109.1.1 70612 1i3zA 103 29.24 d.93.1.1 83667 2bmoA 447 29.56 b.33.1.2,d.129.3.3 128804,128805 1xd5A 112 30.07 b.78.1.1 115155 1hx0A 496 30.28 b.71.1.1,c.1.8.1 61346,61347 1uypA 432 31.16 b.29.1.19,b.67.2.3 100176,100177 2bv4A 113 31.98 1s1dA 331 32.25 b.67.3.1 98344 3lhnA 126 32.61 2afgA 140 33.17 b.42.1.1 25514 1oh0A 131 33.68 d.17.4.3 87004 2zwaA 695 34.11 2w7qA 204 34.81 2dx0A 138 35.63 2f2fA 222 36.99 b.42.2.1 132810 3gpuA 256 38.02 2chhA 114 38.31 b.115.1.1 130471 1itwA 741 39.14 c.77.1.2 76793 3d89A 157 39.73 2w20A 471 40.27 2w1vA 276 40.32 1rg8A 146 40.59 b.42.1.1 111801 1hcxA 127 40.75 b.109.1.1 65800 3dalA 196 41.05 1jt7A 146 41.15 b.42.1.1 67255 2rliA 171 41.91 1umwA 237 42.02 d.223.1.2,d.223.1.2 99631,99632 3hikA 237 42.46 3hx6A 570 42.61 3kstA 306 43.58 2vhhA 405 44.19 3g6jA 644 44.96 3igqA 201 45.22 2pooA 355 45.31 b.68.3.1 27626 2psbA 320 45.99 c.153.1.1 149819 3gceA 121 46.08 2cw8A 537 46.72 3c7fA 487 47.62 1rwhA 757 48.43 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2ej8A 160 49.40 2ie2A 222 51.15 2d5fA 493 51.21 2p39A 155 52.24 1pjjA 271 52.70 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2ihoA 293 52.88 b.42.2.1,d.3.1.18 147681,147682 2aaiB 262 54.43 b.42.2.1,b.42.2.1 25561,25562 2z4iA 233 54.47 1m16A 146 54.69 b.42.1.1 91164 2o62A 270 55.96 b.60.1.9,b.60.1.9 148622,148623 1tdzA 272 56.05 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 3b3qE 197 57.10 b.29.1.4 154813 1knmA 130 57.42 b.42.2.1 72781 2o5fA 171 58.11 d.113.1.2 148596 2wjsA 608 58.46 3c3vA 510 59.11 2r16A 182 60.94 2dvkA 188 60.97 2wg3C 463 61.56 2ichA 335 62.25 b.176.1.1 147602 1a1aA 107 65.10 d.93.1.1 40449 1vqoK 132 65.75 b.39.1.1 120372 2p7jA 287 65.97 d.110.6.2,d.110.6.2 149287,149288 1wcdJ 441 66.00 b.121.4.9 120887 2ijaA 295 66.30 3bgaA 1010 66.52 1zn6A 227 66.75 d.303.1.1 125373 1qu0A 191 67.49 b.29.1.4 24225 2qxlA 658 68.08 2hdvA 111 69.42 2de6D 115 69.44 2exnA 136 69.46 b.165.1.1 132562 2yxyA 115 69.64 2w5nA 367 70.10 2a50B 168 70.29 2z8rA 591 70.37 2it1A 362 72.14 3cnwA 148 72.71 d.129.3.8 156848 3cwfA 122 72.86 1h3iA 293 73.49 b.76.2.1,b.85.7.1 76635,76636 1h6lA 353 74.08 b.68.3.1 60687 2rh7A 239 76.07 d.22.1.1 152030 1tzeE 98 77.54 d.93.1.1 40468 1xsjA 778 77.56 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1p0zA 131 77.81 d.110.6.1 93882 2ci9A 102 79.74 1uliA 460 80.48 b.33.1.2,d.129.3.3 107921,107922 1ybiA 288 81.50 3d00A 191 81.65 1i0vA 104 81.69 d.1.1.4 36054 2gw4B 162 83.09 3dohA 380 84.57 3e5wA 229 85.75 2ib5A 233 86.74 1kcxA 518 87.14 b.92.1.3,c.1.9.6 90953,90954 1j31A 262 87.17 d.160.1.2 90808 2b1xA 470 89.25 b.33.1.2,d.129.3.3 127675,127676 3gkeA 349 89.47