# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 2.60e-11 2h14A 317 3.36e-11 1gxrA 337 7.50e-11 b.69.4.1 70722 3hxjA 330 8.80e-11 1a0rB 340 1.04e-10 b.69.4.1 27658 2gnqA 336 1.50e-10 1nr0A 611 1.80e-10 b.69.4.1,b.69.4.1 86078,86079 2bcjB 340 1.98e-10 b.69.4.1 128289 1q7fA 286 2.01e-10 b.68.9.1 96036 3dxkC 372 2.07e-10 1r5mA 425 2.21e-10 2pbiB 354 2.24e-10 1gotB 340 2.77e-10 b.69.4.1 27648 3frxA 319 5.01e-10 3ei4B 436 5.60e-10 2qc5A 300 7.21e-10 3acpA 417 9.12e-10 2z2nA 299 9.89e-10 3fvzA 329 1.19e-09 1yfqA 342 1.81e-09 b.69.4.2 116680 1k8kC 372 2.22e-09 b.69.4.1 68308 3greA 437 3.16e-09 1nexB 464 4.14e-09 a.158.1.1,b.69.4.1 80443,80444 3fm0A 345 4.77e-09 3ei3B 383 5.27e-09 1pguA 615 5.66e-09 b.69.4.1,b.69.4.1 88069,88070 2p4oA 306 7.79e-09 b.68.6.3 149216 2oitA 434 7.91e-09 3i2nA 357 8.48e-09 3dwlC 377 1.11e-08 3k26A 366 1.21e-08 1l0qA 391 1.39e-08 b.1.3.1,b.69.2.3 77644,77645 1u4cA 349 1.40e-08 b.69.4.2 107666 2ovrB 445 1.85e-08 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 2.33e-08 3bwsA 433 3.98e-08 1s4uX 407 4.61e-08 b.69.4.1 112027 2qxvA 361 5.33e-08 2hesX 330 6.07e-08 1rwiA 270 6.65e-08 b.68.9.1 97987 2vduB 450 1.17e-07 3elqA 571 1.19e-07 3dw8B 447 1.22e-07 3hrpA 409 1.39e-07 2aq5A 402 1.50e-07 2pm7B 297 2.56e-07 1k32A 1045 3.40e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3f3fA 351 3.66e-07 1p22A 435 4.36e-07 a.158.1.1,b.69.4.1 87715,87716 2w18A 356 8.67e-07 3c99A 432 9.42e-07 1ri6A 343 1.24e-06 b.69.11.1 97503 1sq9A 397 1.25e-06 b.69.4.1 105889 3cfsB 414 1.78e-06 2dg1A 333 3.00e-06 b.68.6.1 131493 2ojhA 297 3.02e-06 2hqsA 415 3.18e-06 b.68.4.1,c.51.2.1 136662,136663 3e5zA 296 3.81e-06 3gfcA 425 4.49e-06 3i1cA 324 5.97e-06 3li4A 314 7.10e-06 1pbyB 337 1.09e-05 b.69.2.2 94422 3li5A 314 1.67e-05 1kb0A 677 2.81e-05 a.3.1.6,b.70.1.1 68378,68379 3g4eA 297 3.23e-05 1n6eA 1071 3.37e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2oajA 902 4.46e-05 3li3A 314 4.63e-05 1yiqA 689 5.30e-05 3kyaA 496 5.92e-05 2gc7A 386 0.000116 b.69.2.1 134954 3dr2A 305 0.000175 1kv9A 668 0.000180 a.3.1.6,b.70.1.1 73056,73057 2ad6A 571 0.000219 b.70.1.1 126568 1pjxA 314 0.000225 b.68.6.1 104167 2ghsA 326 0.000225 b.68.6.1 135209 1jmxB 349 0.000276 b.69.2.2 66906 1lrwA 600 0.000341 b.70.1.1 91111 1w6sA 599 0.000838 b.70.1.1 114284 3fgbA 361 0.001234 1g72A 573 0.001818 b.70.1.1 27680 3hfqA 347 0.002885 2d5lA 706 0.002888 2z3zA 706 0.004204 2p9wA 334 0.005817 3dsmA 328 0.007083 2qe8A 343 0.01999 2qr5A 582 0.03329 b.69.7.2,c.69.1.33 151278,151279 2be1A 339 0.03630 3hacA 728 0.04059 1orvA 728 0.04136 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 0.04177 1v04A 355 0.04212 b.68.6.2 100240 3c5mA 396 0.05280 3g0bA 740 0.05295 1xfdA 723 0.05838 b.70.3.1,c.69.1.24 115251,115252 1o6gA 710 0.08606 b.69.7.1,c.69.1.4 81087,81088 1e8nA 710 0.09381 b.69.7.1,c.69.1.4 27675,34643 2ww5A 468 0.1061 2iwkA 642 0.1142 2oizA 361 0.1269 2hyxA 352 0.1320 2iaaA 390 0.1716 1jofA 365 0.2025 b.69.10.1 71775 2agyA 361 0.2345 2iwaA 266 0.2753 2bklA 695 0.2822 3c75H 426 0.3472 1bfgA 146 0.4142 b.42.1.1 25485 2gopA 347 0.4262 1h2xA 710 0.5075 b.69.7.1,c.69.1.4 76598,76599 2hu5A 582 0.5870 b.69.7.2,c.69.1.33 136763,136764 1xipA 388 0.6958 b.69.14.1 115360 3e0cA 1140 1.263 3hihA 223 1.292 2b5nA 323 1.424 2g8sA 353 1.669 3dasA 347 1.776 3dohA 380 1.971 1w8oA 601 3.111 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1h2wA 710 3.131 b.69.7.1,c.69.1.4 76596,76597 1mt6A 280 3.188 b.76.2.1,b.85.7.1 79446,79447 3ii7A 306 3.348 1npeA 267 3.985 b.68.5.1 92032 2v05A 311 4.112 2ismA 352 4.601 2zwaA 695 4.754 2vpjA 301 4.774 3fvhA 237 4.779 2fluX 308 4.924 b.68.11.1 133750 2wozA 318 5.043 2j8gA 339 5.171 b.109.1.1,c.1.8.8 147915,147916 3c8cA 240 5.506 3llpA 493 6.221 1x2jA 316 7.175 b.68.11.1 121643 1wcqA 601 7.267 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1r17A 343 8.549 b.2.3.4,b.2.3.4 96796,96797 3ei3A 1158 8.625 2jd4A 383 9.173 1cruA 454 9.194 b.68.2.1 27617 2bibA 547 9.210 b.109.1.1,d.157.1.8 128581,128582 1sqjA 789 10.30 b.69.13.1,b.69.13.1 105918,105919 3f6kA 685 10.44 2fp8A 322 10.89 3b7fA 394 12.26 1iwlA 182 13.02 b.125.1.1 83757 3ah2A 288 13.35 3c12A 138 13.49 3hikA 237 13.87 1ms9A 648 14.78 b.29.1.15,b.68.1.1 85088,85089 2qpzA 103 15.57 2sliA 679 15.75 b.29.1.9,b.68.1.1 24274,27611 2aukA 190 15.98 1barA 140 17.60 b.42.1.1 25504 2cn3A 737 17.74 2i7fA 108 18.05 2j04B 524 18.39 2p25A 126 18.68 2w20A 471 19.73 2e4qA 109 20.68 1suuA 312 21.14 b.68.10.1 99006 2yugA 155 26.41 1h3iA 293 27.07 b.76.2.1,b.85.7.1 76635,76636 1n1tA 641 27.21 b.29.1.15,b.68.1.1 79821,79822 1zboA 210 27.70 b.122.1.10 124859 1fwxA 595 27.91 b.6.1.4,b.69.3.1 60069,60070 2uxyA 341 28.22 1zgkA 308 28.70 b.68.11.1 145998 2biwA 490 29.43 2vw2A 697 29.61 1uf5A 303 31.38 d.160.1.2 107808 1utcA 363 31.84 a.118.1.4,b.69.6.1 99914,99915 2w38A 438 33.12 2eceA 462 34.63 2bv4A 113 34.79 1h09A 338 35.58 b.109.1.1,c.1.8.8 83420,83421 2pooA 355 36.75 b.68.3.1 27626 2z1pA 348 38.93 1h30A 422 39.49 b.29.1.4,b.29.1.4 76604,76605 2chhA 114 40.10 b.115.1.1 130471 1h6lA 353 41.11 b.68.3.1 60687 1umwA 237 41.21 d.223.1.2,d.223.1.2 99631,99632 1o7nA 449 42.79 b.33.1.2,d.129.3.3 81162,81163 1wp5A 323 45.38 b.68.10.1 114780 2bmoA 447 47.11 b.33.1.2,d.129.3.3 128804,128805 2v2gA 233 48.41 3dqyA 106 49.31 2wjsA 608 49.50 2rq9A 143 50.09 1w2tA 432 58.38 b.29.1.19,b.67.2.3 120607,120608 3ci6A 171 59.49 2rliA 171 59.59 2de6D 115 60.27 1b1zA 219 60.95 b.40.2.2,d.15.6.1 25216,37805 1okjA 251 62.77 c.55.1.9,c.55.1.9 103998,103999 1hx0A 496 63.04 b.71.1.1,c.1.8.1 61346,61347 2vhhA 405 67.96 2qxlA 658 68.32 2ggtA 164 69.04 c.47.1.10 135156 1gyoA 109 69.23 a.138.1.1 70763 3h6jA 438 69.56 1zvtA 256 69.56 3kptA 355 70.71 2b1xA 470 71.14 b.33.1.2,d.129.3.3 127675,127676 3g6jA 644 71.52 2w7qA 204 72.78 1k3xA 262 74.81 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1gmiA 136 77.86 b.7.1.1 65309 3f7fA 729 78.57 2p39A 155 79.15 2wn0A 169 80.93 1ybiA 288 81.65 3kstA 306 82.93 3hkxA 283 83.72 1afcA 140 83.84 b.42.1.1 25506 2vnlA 151 84.93 3kh7A 176 85.45