# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 4.01e-12 2h14A 317 5.59e-12 3hxjA 330 1.21e-11 1gxrA 337 1.26e-11 b.69.4.1 70722 1a0rB 340 1.63e-11 b.69.4.1 27658 2gnqA 336 2.74e-11 1nr0A 611 3.47e-11 b.69.4.1,b.69.4.1 86078,86079 2bcjB 340 3.50e-11 b.69.4.1 128289 1q7fA 286 3.80e-11 b.68.9.1 96036 2pbiB 354 4.33e-11 1gotB 340 4.59e-11 b.69.4.1 27648 1r5mA 425 4.71e-11 3dxkC 372 4.73e-11 3frxA 319 8.67e-11 2qc5A 300 1.02e-10 2z2nA 299 1.14e-10 3ei4B 436 1.47e-10 3acpA 417 2.32e-10 3fvzA 329 2.64e-10 1yfqA 342 3.59e-10 b.69.4.2 116680 1k8kC 372 5.61e-10 b.69.4.1 68308 3greA 437 6.39e-10 1nexB 464 1.13e-09 a.158.1.1,b.69.4.1 80443,80444 1pguA 615 1.25e-09 b.69.4.1,b.69.4.1 88069,88070 3ei3B 383 1.34e-09 3fm0A 345 1.63e-09 2p4oA 306 1.93e-09 b.68.6.3 149216 3i2nA 357 2.27e-09 1l0qA 391 2.40e-09 b.1.3.1,b.69.2.3 77644,77645 2oitA 434 2.63e-09 1u4cA 349 3.75e-09 b.69.4.2 107666 3dwlC 377 3.84e-09 3k26A 366 4.28e-09 2ovrB 445 4.82e-09 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 7.16e-09 3bwsA 433 8.47e-09 1rwiA 270 1.37e-08 b.68.9.1 97987 1s4uX 407 1.43e-08 b.69.4.1 112027 2qxvA 361 1.71e-08 2hesX 330 1.76e-08 3elqA 571 2.06e-08 3dw8B 447 2.92e-08 3hrpA 409 3.06e-08 2vduB 450 3.29e-08 2aq5A 402 4.12e-08 1k32A 1045 7.22e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2pm7B 297 8.34e-08 3f3fA 351 1.48e-07 1p22A 435 1.82e-07 a.158.1.1,b.69.4.1 87715,87716 2w18A 356 2.50e-07 1ri6A 343 3.46e-07 b.69.11.1 97503 3c99A 432 4.66e-07 1sq9A 397 5.69e-07 b.69.4.1 105889 2ojhA 297 6.90e-07 2hqsA 415 7.47e-07 b.68.4.1,c.51.2.1 136662,136663 3cfsB 414 8.06e-07 3e5zA 296 1.06e-06 2dg1A 333 1.18e-06 b.68.6.1 131493 3i1cA 324 1.71e-06 3gfcA 425 1.85e-06 3li4A 314 2.32e-06 1pbyB 337 2.82e-06 b.69.2.2 94422 3li5A 314 5.61e-06 1n6eA 1071 8.52e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1kb0A 677 8.65e-06 a.3.1.6,b.70.1.1 68378,68379 3g4eA 297 1.05e-05 3kyaA 496 1.58e-05 2oajA 902 1.69e-05 3li3A 314 1.74e-05 1yiqA 689 2.00e-05 2gc7A 386 3.41e-05 b.69.2.1 134954 3dr2A 305 5.57e-05 1kv9A 668 6.00e-05 a.3.1.6,b.70.1.1 73056,73057 2ghsA 326 6.87e-05 b.68.6.1 135209 1pjxA 314 8.09e-05 b.68.6.1 104167 2ad6A 571 8.45e-05 b.70.1.1 126568 1jmxB 349 0.000103 b.69.2.2 66906 1lrwA 600 0.000141 b.70.1.1 91111 1w6sA 599 0.000292 b.70.1.1 114284 1g72A 573 0.000518 b.70.1.1 27680 3fgbA 361 0.000612 2d5lA 706 0.001178 3hfqA 347 0.001445 2z3zA 706 0.001812 2p9wA 334 0.002115 3dsmA 328 0.002801 2qe8A 343 0.01117 2be1A 339 0.01404 2qr5A 582 0.01448 b.69.7.2,c.69.1.33 151278,151279 1v04A 355 0.01599 b.68.6.2 100240 1xfdA 723 0.02225 b.70.3.1,c.69.1.24 115251,115252 1yr2A 741 0.02376 3hacA 728 0.02581 1orvA 728 0.02628 b.70.3.1,c.69.1.24 87354,87355 3c5mA 396 0.02794 3g0bA 740 0.03934 1e8nA 710 0.04264 b.69.7.1,c.69.1.4 27675,34643 1o6gA 710 0.05882 b.69.7.1,c.69.1.4 81087,81088 2oizA 361 0.07561 2iaaA 390 0.08556 2ww5A 468 0.08591 2iwkA 642 0.08835 2agyA 361 0.09746 1jofA 365 0.1017 b.69.10.1 71775 2hyxA 352 0.1119 3c75H 426 0.1492 2iwaA 266 0.1524 2bklA 695 0.1654 1h2xA 710 0.2136 b.69.7.1,c.69.1.4 76598,76599 2gopA 347 0.2187 1bfgA 146 0.2435 b.42.1.1 25485 2hu5A 582 0.4115 b.69.7.2,c.69.1.33 136763,136764 1xipA 388 0.4371 b.69.14.1 115360 3hihA 223 0.6888 3dasA 347 0.7270 3e0cA 1140 0.7468 2g8sA 353 1.037 1h2wA 710 1.315 b.69.7.1,c.69.1.4 76596,76597 1npeA 267 1.426 b.68.5.1 92032 3ii7A 306 1.427 2b5nA 323 1.433 3dohA 380 1.561 2vpjA 301 1.766 2fluX 308 1.860 b.68.11.1 133750 2wozA 318 2.253 1w8oA 601 2.602 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1mt6A 280 2.635 b.76.2.1,b.85.7.1 79446,79447 2v05A 311 2.679 3fvhA 237 3.222 2zwaA 695 3.348 1x2jA 316 3.463 b.68.11.1 121643 2ismA 352 3.857 1cruA 454 4.522 b.68.2.1 27617 3llpA 493 4.660 1r17A 343 5.312 b.2.3.4,b.2.3.4 96796,96797 1wcqA 601 5.313 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2j8gA 339 5.854 b.109.1.1,c.1.8.8 147915,147916 3ei3A 1158 6.451 1sqjA 789 6.458 b.69.13.1,b.69.13.1 105918,105919 3c8cA 240 6.910 2bibA 547 7.435 b.109.1.1,d.157.1.8 128581,128582 3b7fA 394 8.305 1iwlA 182 8.335 b.125.1.1 83757 1ms9A 648 8.773 b.29.1.15,b.68.1.1 85088,85089 2j04B 524 9.133 2jd4A 383 9.223 3hikA 237 9.493 2qpzA 103 10.51 3c12A 138 10.90 3f6kA 685 11.03 2aukA 190 11.29 2cn3A 737 11.54 2fp8A 322 11.72 1zgkA 308 11.84 b.68.11.1 145998 1barA 140 12.13 b.42.1.1 25504 3ah2A 288 12.18 2p25A 126 12.84 2sliA 679 13.87 b.29.1.9,b.68.1.1 24274,27611 2i7fA 108 14.64 2w20A 471 15.60 1wp5A 323 16.75 b.68.10.1 114780 2e4qA 109 17.40 1n1tA 641 17.96 b.29.1.15,b.68.1.1 79821,79822 2uxyA 341 18.37 2pooA 355 19.56 b.68.3.1 27626 2biwA 490 20.45 1zboA 210 22.27 b.122.1.10 124859 1umwA 237 23.76 d.223.1.2,d.223.1.2 99631,99632 2eceA 462 23.92 1suuA 312 24.12 b.68.10.1 99006 1h30A 422 24.97 b.29.1.4,b.29.1.4 76604,76605 2v2gA 233 25.08 1h6lA 353 25.45 b.68.3.1 60687 1fwxA 595 25.56 b.6.1.4,b.69.3.1 60069,60070 2w38A 438 25.89 1h3iA 293 26.01 b.76.2.1,b.85.7.1 76635,76636 1utcA 363 26.36 a.118.1.4,b.69.6.1 99914,99915 1uf5A 303 27.48 d.160.1.2 107808 2bv4A 113 27.52 2yugA 155 29.13 2vw2A 697 30.94 2chhA 114 31.94 b.115.1.1 130471 1o7nA 449 32.81 b.33.1.2,d.129.3.3 81162,81163 2rq9A 143 32.97 2z1pA 348 34.38 2bmoA 447 36.21 b.33.1.2,d.129.3.3 128804,128805 1h09A 338 40.13 b.109.1.1,c.1.8.8 83420,83421 2rliA 171 43.87 3dqyA 106 44.86 3ci6A 171 45.55 2jkbA 686 47.99 2vhhA 405 49.56 3h6jA 438 49.75 2de6D 115 50.20 2madH 373 51.60 b.69.2.1 27639 2ggtA 164 53.85 c.47.1.10 135156 2vnlA 151 54.01 1afcA 140 54.09 b.42.1.1 25506 2wjsA 608 54.14 1f5fA 205 54.91 b.29.1.4 24222 1zvtA 256 55.95 1gmiA 136 56.64 b.7.1.1 65309 1okjA 251 56.78 c.55.1.9,c.55.1.9 103998,103999 1w2tA 432 56.98 b.29.1.19,b.67.2.3 120607,120608 2w7qA 204 57.96 2zuxA 591 58.96 1hx0A 496 58.98 b.71.1.1,c.1.8.1 61346,61347 3f7fA 729 61.25 2qxlA 658 62.74 2b1xA 470 62.82 b.33.1.2,d.129.3.3 127675,127676 1s1dA 331 63.01 b.67.3.1 98344 3silA 379 67.62 b.68.1.1 27542 3hkxA 283 67.87 3g6jA 644 69.90 1f89A 291 70.55 d.160.1.1 64988 3c3vA 510 71.69 3d1gA 366 72.20 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 3kstA 306 72.64 1gyoA 109 73.42 a.138.1.1 70763 1b1zA 219 73.49 b.40.2.2,d.15.6.1 25216,37805 2p39A 155 75.15 1ybiA 288 75.48 1k3xA 262 76.62 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 3kptA 355 78.00 3kh7A 176 80.94 2wn0A 169 81.13 2wiiA 645 88.09 2w1kA 252 88.14 2h0bA 184 89.03 3l6vA 370 89.73