# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 5.65e-14 2h14A 317 8.40e-14 3hxjA 330 1.55e-13 1a0rB 340 3.18e-13 b.69.4.1 27658 2gnqA 336 3.79e-13 2bcjB 340 4.92e-13 b.69.4.1 128289 1gotB 340 7.54e-13 b.69.4.1 27648 1gxrA 337 7.62e-13 b.69.4.1 70722 2pbiB 354 9.24e-13 1r5mA 425 1.10e-12 3dxkC 372 2.47e-12 1nr0A 611 2.50e-12 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 2.96e-12 2qc5A 300 3.63e-12 1q7fA 286 4.51e-12 b.68.9.1 96036 2z2nA 299 1.44e-11 3ei4B 436 1.56e-11 1rwiA 270 1.85e-11 b.68.9.1 97987 1k8kC 372 2.99e-11 b.69.4.1 68308 1l0qA 391 3.09e-11 b.1.3.1,b.69.2.3 77644,77645 3acpA 417 3.17e-11 3greA 437 3.73e-11 1yfqA 342 3.77e-11 b.69.4.2 116680 3fm0A 345 5.45e-11 3ei3B 383 5.81e-11 1pguA 615 6.02e-11 b.69.4.1,b.69.4.1 88069,88070 2ovrB 445 7.46e-11 a.158.1.1,b.69.4.1 145735,145736 3dwlC 377 1.98e-10 2p4oA 306 2.07e-10 b.68.6.3 149216 1nexB 464 2.29e-10 a.158.1.1,b.69.4.1 80443,80444 3fvzA 329 2.44e-10 3k26A 366 2.65e-10 3iiwA 365 5.98e-10 1u4cA 349 6.04e-10 b.69.4.2 107666 3bwsA 433 7.50e-10 3i2nA 357 1.00e-09 2hesX 330 1.59e-09 2qxvA 361 2.06e-09 1p22A 435 3.26e-09 a.158.1.1,b.69.4.1 87715,87716 1n6eA 1071 6.37e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2pm7B 297 6.69e-09 1k32A 1045 7.15e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3elqA 571 7.17e-09 2oitA 434 8.87e-09 2aq5A 402 9.21e-09 1s4uX 407 1.62e-08 b.69.4.1 112027 3hrpA 409 2.70e-08 3dw8B 447 4.20e-08 3f3fA 351 4.25e-08 1sq9A 397 8.17e-08 b.69.4.1 105889 3e5zA 296 8.61e-08 2vduB 450 1.03e-07 2w18A 356 1.04e-07 3c99A 432 1.53e-07 3i1cA 324 1.56e-07 2dg1A 333 1.76e-07 b.68.6.1 131493 1ri6A 343 2.05e-07 b.69.11.1 97503 2ojhA 297 2.21e-07 3cfsB 414 2.64e-07 3li4A 314 3.97e-07 2hqsA 415 5.25e-07 b.68.4.1,c.51.2.1 136662,136663 3gfcA 425 1.24e-06 1pbyB 337 1.33e-06 b.69.2.2 94422 3g4eA 297 1.46e-06 3li5A 314 4.16e-06 3kyaA 496 6.53e-06 3li3A 314 7.11e-06 3dr2A 305 7.28e-06 2oajA 902 7.72e-06 1pjxA 314 9.94e-06 b.68.6.1 104167 2ad6A 571 2.35e-05 b.70.1.1 126568 1yiqA 689 2.86e-05 2gc7A 386 4.24e-05 b.69.2.1 134954 1kb0A 677 5.22e-05 a.3.1.6,b.70.1.1 68378,68379 2ghsA 326 5.82e-05 b.68.6.1 135209 1jmxB 349 6.52e-05 b.69.2.2 66906 1g72A 573 6.62e-05 b.70.1.1 27680 1kv9A 668 6.75e-05 a.3.1.6,b.70.1.1 73056,73057 3hfqA 347 0.000131 3fgbA 361 0.000196 1lrwA 600 0.000204 b.70.1.1 91111 2p9wA 334 0.000220 1w6sA 599 0.000431 b.70.1.1 114284 3dsmA 328 0.000980 2qe8A 343 0.001255 1orvA 728 0.002080 b.70.3.1,c.69.1.24 87354,87355 2d5lA 706 0.003269 1v04A 355 0.004226 b.68.6.2 100240 2z3zA 706 0.004551 2be1A 339 0.007882 1xfdA 723 0.009894 b.70.3.1,c.69.1.24 115251,115252 1yr2A 741 0.02205 1npeA 267 0.03374 b.68.5.1 92032 2iwaA 266 0.04728 2qr5A 582 0.04846 b.69.7.2,c.69.1.33 151278,151279 1jofA 365 0.05720 b.69.10.1 71775 2oizA 361 0.08474 3g0bA 740 0.09263 3c5mA 396 0.09425 1o6gA 710 0.1368 b.69.7.1,c.69.1.4 81087,81088 2iwkA 642 0.1689 2hu5A 582 0.1775 b.69.7.2,c.69.1.33 136763,136764 1e8nA 710 0.1787 b.69.7.1,c.69.1.4 27675,34643 3hacA 728 0.1870 2gopA 347 0.2147 2b5nA 323 0.2377 2ismA 352 0.2756 1bfgA 146 0.2804 b.42.1.1 25485 2iaaA 390 0.2863 3dasA 347 0.2977 2agyA 361 0.3085 1xipA 388 0.3634 b.69.14.1 115360 1h2wA 710 0.4088 b.69.7.1,c.69.1.4 76596,76597 1cruA 454 0.4270 b.68.2.1 27617 2fp8A 322 0.4420 2bklA 695 0.5384 1h2xA 710 1.128 b.69.7.1,c.69.1.4 76598,76599 2ww5A 468 1.202 3c75H 426 1.570 2g8sA 353 1.614 3ei3A 1158 1.705 3e0cA 1140 1.970 3ah2A 288 3.382 2hyxA 352 3.637 2vpjA 301 7.365 3ii7A 306 8.231 3llpA 493 8.746 2yugA 155 9.312 3hihA 223 9.382 2fluX 308 9.668 b.68.11.1 133750 2v05A 311 10.03 1suuA 312 10.33 b.68.10.1 99006 2dpfA 115 12.33 2zuxA 591 12.97 2rq9A 143 13.42 2j04B 524 14.11 2wozA 318 15.40 2vg9A 217 16.08 1fwxA 595 17.00 b.6.1.4,b.69.3.1 60069,60070 3gc3B 363 17.66 1x2jA 316 18.12 b.68.11.1 121643 1afcA 140 20.41 b.42.1.1 25506 2qwvA 208 21.04 c.116.1.7 151439 2zwaA 695 22.69 3b7fA 394 24.07 1utcA 363 24.50 a.118.1.4,b.69.6.1 99914,99915 1zboA 210 25.88 b.122.1.10 124859 2c1fA 234 28.24 2jd4A 383 35.08 1k3xA 262 35.70 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2qpzA 103 35.75 2cn3A 737 36.31 2j8gA 339 37.34 b.109.1.1,c.1.8.8 147915,147916 3ci6A 171 38.14 2uxyA 341 39.02 3kh7A 176 49.16 2fs3A 282 49.30 2f7fA 494 50.48 c.1.17.1,d.41.2.1 133088,133089 1wp5A 323 52.53 b.68.10.1 114780 3a0vA 96 53.75 2ggtA 164 54.28 c.47.1.10 135156 1zgkA 308 55.70 b.68.11.1 145998 2vxrA 482 57.24 1f5fA 205 58.16 b.29.1.4 24222 3fz3A 531 58.21 1r17A 343 58.33 b.2.3.4,b.2.3.4 96796,96797 2aukA 190 58.96 1barA 140 62.18 b.42.1.1 25504 1k3iA 656 64.24 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3a0sA 96 64.60 2rliA 171 65.96 3dzwA 109 66.95 1zi0A 307 73.70 1sqjA 789 80.10 b.69.13.1,b.69.13.1 105918,105919 2pagA 135 81.23 d.369.1.1 149343 1h09A 338 89.68 b.109.1.1,c.1.8.8 83420,83421