# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 2.78e-13 2h14A 317 3.98e-13 3hxjA 330 8.68e-13 1q7fA 286 1.21e-12 b.68.9.1 96036 2gnqA 336 1.61e-12 1gxrA 337 2.25e-12 b.69.4.1 70722 1nr0A 611 2.99e-12 b.69.4.1,b.69.4.1 86078,86079 2qc5A 300 3.07e-12 1r5mA 425 3.55e-12 1a0rB 340 4.20e-12 b.69.4.1 27658 1gotB 340 4.39e-12 b.69.4.1 27648 2bcjB 340 5.62e-12 b.69.4.1 128289 2z2nA 299 5.85e-12 3frxA 319 9.49e-12 2pbiB 354 1.23e-11 3dxkC 372 1.38e-11 3fvzA 329 4.22e-11 3acpA 417 5.03e-11 1l0qA 391 7.33e-11 b.1.3.1,b.69.2.3 77644,77645 1pguA 615 1.20e-10 b.69.4.1,b.69.4.1 88069,88070 3greA 437 1.29e-10 1k8kC 372 1.29e-10 b.69.4.1 68308 3ei4B 436 1.34e-10 1yfqA 342 1.35e-10 b.69.4.2 116680 2p4oA 306 1.82e-10 b.68.6.3 149216 3fm0A 345 2.98e-10 1rwiA 270 3.50e-10 b.68.9.1 97987 2ovrB 445 3.62e-10 a.158.1.1,b.69.4.1 145735,145736 1nexB 464 3.72e-10 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 8.23e-10 1u4cA 349 8.55e-10 b.69.4.2 107666 3bwsA 433 1.10e-09 3elqA 571 1.16e-09 2oitA 434 1.64e-09 3dwlC 377 1.82e-09 3k26A 366 2.18e-09 3iiwA 365 3.05e-09 2qxvA 361 3.29e-09 3i2nA 357 3.39e-09 1s4uX 407 3.47e-09 b.69.4.1 112027 3hrpA 409 3.95e-09 2hesX 330 6.31e-09 1k32A 1045 8.67e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3dw8B 447 2.12e-08 2aq5A 402 2.77e-08 1p22A 435 2.95e-08 a.158.1.1,b.69.4.1 87715,87716 2w18A 356 3.95e-08 3e5zA 296 4.03e-08 2vduB 450 5.97e-08 1sq9A 397 9.87e-08 b.69.4.1 105889 1n6eA 1071 1.10e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2dg1A 333 1.16e-07 b.68.6.1 131493 1ri6A 343 1.26e-07 b.69.11.1 97503 2pm7B 297 1.35e-07 3i1cA 324 1.45e-07 2hqsA 415 1.75e-07 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 2.59e-07 3li4A 314 3.20e-07 3f3fA 351 4.24e-07 3c99A 432 4.96e-07 1pbyB 337 7.00e-07 b.69.2.2 94422 2oajA 902 9.10e-07 3g4eA 297 1.02e-06 3li5A 314 1.07e-06 3gfcA 425 1.84e-06 3cfsB 414 1.99e-06 1kb0A 677 2.07e-06 a.3.1.6,b.70.1.1 68378,68379 3li3A 314 3.68e-06 3dr2A 305 4.38e-06 2gc7A 386 5.35e-06 b.69.2.1 134954 1pjxA 314 6.01e-06 b.68.6.1 104167 2ghsA 326 6.89e-06 b.68.6.1 135209 1yiqA 689 7.46e-06 1kv9A 668 1.75e-05 a.3.1.6,b.70.1.1 73056,73057 3kyaA 496 1.84e-05 2ad6A 571 3.25e-05 b.70.1.1 126568 1lrwA 600 4.40e-05 b.70.1.1 91111 1jmxB 349 6.84e-05 b.69.2.2 66906 1g72A 573 8.83e-05 b.70.1.1 27680 3fgbA 361 0.000149 3hfqA 347 0.000197 2d5lA 706 0.000345 1w6sA 599 0.000352 b.70.1.1 114284 3dsmA 328 0.000466 2p9wA 334 0.000551 2z3zA 706 0.000557 1v04A 355 0.002310 b.68.6.2 100240 2be1A 339 0.002351 2qe8A 343 0.002959 1xfdA 723 0.004795 b.70.3.1,c.69.1.24 115251,115252 1orvA 728 0.005590 b.70.3.1,c.69.1.24 87354,87355 2oizA 361 0.005887 1yr2A 741 0.01002 2gopA 347 0.01008 3hacA 728 0.01222 3c5mA 396 0.01467 3g0bA 740 0.01470 2iwaA 266 0.01488 1o6gA 710 0.01640 b.69.7.1,c.69.1.4 81087,81088 2iaaA 390 0.01783 2qr5A 582 0.01935 b.69.7.2,c.69.1.33 151278,151279 1e8nA 710 0.02098 b.69.7.1,c.69.1.4 27675,34643 1jofA 365 0.02491 b.69.10.1 71775 1bfgA 146 0.03486 b.42.1.1 25485 2bklA 695 0.03548 3c75H 426 0.04862 2agyA 361 0.05053 1npeA 267 0.07221 b.68.5.1 92032 2hu5A 582 0.07632 b.69.7.2,c.69.1.33 136763,136764 2ww5A 468 0.07698 2iwkA 642 0.1030 1xipA 388 0.1101 b.69.14.1 115360 3e0cA 1140 0.1141 3ei3A 1158 0.2558 1h2wA 710 0.3231 b.69.7.1,c.69.1.4 76596,76597 1h2xA 710 0.3449 b.69.7.1,c.69.1.4 76598,76599 2hyxA 352 0.4137 3dasA 347 0.4455 3llpA 493 0.5282 2b5nA 323 0.5896 2fluX 308 0.7124 b.68.11.1 133750 1utcA 363 0.8126 a.118.1.4,b.69.6.1 99914,99915 3gc3B 363 0.8429 2ismA 352 0.9233 1x2jA 316 1.017 b.68.11.1 121643 2wozA 318 1.046 3hihA 223 1.138 2g8sA 353 1.297 3ah2A 288 1.390 3ii7A 306 1.527 1sqjA 789 1.766 b.69.13.1,b.69.13.1 105918,105919 2v05A 311 1.775 2vpjA 301 1.826 2fp8A 322 1.921 2bibA 547 1.949 b.109.1.1,d.157.1.8 128581,128582 2zwaA 695 2.313 2dpfA 115 2.535 2j8gA 339 2.567 b.109.1.1,c.1.8.8 147915,147916 1barA 140 2.810 b.42.1.1 25504 3c12A 138 2.899 3dzwA 109 3.443 3fvhA 237 3.806 1mt6A 280 4.067 b.76.2.1,b.85.7.1 79446,79447 3b7fA 394 4.287 3dohA 380 4.337 2j04B 524 4.378 2rq9A 143 4.532 2pooA 355 5.590 b.68.3.1 27626 1wcqA 601 5.616 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1cruA 454 5.636 b.68.2.1 27617 2jkbA 686 6.438 1w8oA 601 7.762 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1afcA 140 8.404 b.42.1.1 25506 1jpcA 109 8.406 b.78.1.1 27986 2fdbM 164 9.004 b.42.1.1 145162 1h6lA 353 9.96 b.68.3.1 60687 1iwlA 182 10.01 b.125.1.1 83757 2jd4A 383 10.06 1zgkA 308 10.28 b.68.11.1 145998 1r17A 343 11.39 b.2.3.4,b.2.3.4 96796,96797 3f6kA 685 11.59 3a0eA 110 11.62 1uf5A 303 11.86 d.160.1.2 107808 3hikA 237 11.92 2yugA 155 12.10 2p25A 126 12.23 4fgf 146 12.84 1suuA 312 13.21 b.68.10.1 99006 1ms9A 648 13.24 b.29.1.15,b.68.1.1 85088,85089 2cn3A 737 13.63 2eceA 462 13.71 2w7qA 204 14.16 2p39A 155 14.75 1wp5A 323 14.98 b.68.10.1 114780 3c8cA 240 15.59 2uxyA 341 16.68 1zboA 210 17.99 b.122.1.10 124859 2vhhA 405 18.05 1s1dA 331 18.87 b.67.3.1 98344 2e4qA 109 21.09 1h09A 338 22.09 b.109.1.1,c.1.8.8 83420,83421 1m16A 146 22.75 b.42.1.1 91164 1fwxA 595 23.40 b.6.1.4,b.69.3.1 60069,60070 2zuxA 591 23.43 2w38A 438 24.23 1jt7A 146 24.61 b.42.1.1 67255 1umwA 237 24.63 d.223.1.2,d.223.1.2 99631,99632 2qpzA 103 24.70 2zuyA 620 24.87 2afgA 140 25.03 b.42.1.1 25514 2aukA 190 25.13 1rg8A 146 25.17 b.42.1.1 111801 2biwA 490 26.35 2sliA 679 27.00 b.29.1.9,b.68.1.1 24274,27611 1qxmA 300 27.13 b.42.2.1,b.42.2.1 96533,96534 1f89A 291 28.32 d.160.1.1 64988 3h6jA 438 30.60 1n1tA 641 30.80 b.29.1.15,b.68.1.1 79821,79822 1k3xA 262 30.82 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2ggtA 164 31.83 c.47.1.10 135156 2i7fA 108 32.42 1o7nA 449 32.81 b.33.1.2,d.129.3.3 81162,81163 2w20A 471 32.98 3kstA 306 33.64 1h3iA 293 34.71 b.76.2.1,b.85.7.1 76635,76636 2f6eA 127 36.41 3fosA 214 38.17 1xd5A 112 38.88 b.78.1.1 115155 2kppA 114 39.46 2v2gA 233 39.51 3hkxA 283 39.72 2vnlA 151 40.17 2bmoA 447 40.90 b.33.1.2,d.129.3.3 128804,128805 1at0A 145 41.07 b.86.1.1 28374 2rliA 171 45.83 1hx0A 496 46.39 b.71.1.1,c.1.8.1 61346,61347 2qxlA 658 47.59 2ebsA 789 49.02 b.69.13.1,b.69.13.1 146772,146773 2ouxA 286 51.56 a.118.26.1,d.37.1.1 149031,149032 2chhA 114 51.83 b.115.1.1 130471 1h8gA 95 52.35 b.109.1.1 65735 3dqyA 106 54.75 1rieA 129 54.87 b.33.1.1 24427 3isyA 120 55.60 3silA 379 55.82 b.68.1.1 27542 2bv4A 113 56.62 3cnwA 148 57.85 d.129.3.8 156848 1f5fA 205 59.42 b.29.1.4 24222 2f2fA 222 59.64 b.42.2.1 132810 2dx0A 138 62.02 1k3iA 656 62.25 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1p63A 144 62.66 b.42.1.1 94153 1j31A 262 63.19 d.160.1.2 90808 2w5nA 367 63.81 2h0bA 184 67.32 3ci6A 171 68.86 1ijtA 128 69.22 b.42.1.1 62510 2z1pA 348 71.84 1gydB 315 71.85 b.67.2.1 70751 1itwA 741 72.20 c.77.1.2 76793 3ge2A 130 72.32 1kj1D 109 74.39 b.78.1.1 68639 3l48A 94 74.55 3lhnA 126 74.62 1a1aA 107 76.10 d.93.1.1 40449 2gw4B 162 76.70 1mdaH 368 77.47 b.69.2.1 27637 2o62A 270 77.86 b.60.1.9,b.60.1.9 148622,148623 2p7jA 287 80.28 d.110.6.2,d.110.6.2 149287,149288 3lv4A 456 82.57 1mixA 206 82.84 a.11.2.1,b.55.1.5 79166,79167 1xksA 450 84.34 b.69.14.1 115422 2de6D 115 85.25 2w1vA 276 85.29 2zpdA 190 85.35 1ybiA 288 85.45 2irpA 208 89.15