# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3dxkC 372 6.70e-08 3emhA 318 6.99e-08 2h14A 317 8.09e-08 1gxrA 337 8.45e-08 b.69.4.1 70722 2bcjB 340 9.54e-08 b.69.4.1 128289 1a0rB 340 1.03e-07 b.69.4.1 27658 1gotB 340 1.40e-07 b.69.4.1 27648 1r5mA 425 1.64e-07 2gnqA 336 1.73e-07 2pbiB 354 2.12e-07 2z2nA 299 2.47e-07 1nr0A 611 2.69e-07 b.69.4.1,b.69.4.1 86078,86079 3hxjA 330 2.76e-07 1q7fA 286 3.62e-07 b.68.9.1 96036 3frxA 319 3.70e-07 3fvzA 329 4.08e-07 3ei4B 436 4.10e-07 1k8kC 372 5.09e-07 b.69.4.1 68308 3acpA 417 7.46e-07 1yfqA 342 9.09e-07 b.69.4.2 116680 2qc5A 300 1.14e-06 1nexB 464 1.20e-06 a.158.1.1,b.69.4.1 80443,80444 3k26A 366 1.26e-06 3fm0A 345 1.36e-06 1l0qA 391 1.69e-06 b.1.3.1,b.69.2.3 77644,77645 3ei3B 383 1.92e-06 2ovrB 445 2.18e-06 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 2.25e-06 1u4cA 349 2.30e-06 b.69.4.2 107666 1s4uX 407 2.41e-06 b.69.4.1 112027 2qxvA 361 3.96e-06 3i2nA 357 5.96e-06 2oitA 434 6.21e-06 1pguA 615 6.75e-06 b.69.4.1,b.69.4.1 88069,88070 3bwsA 433 7.18e-06 3greA 437 7.18e-06 3dwlC 377 7.22e-06 2vduB 450 1.18e-05 1rwiA 270 1.25e-05 b.68.9.1 97987 2hesX 330 1.42e-05 1sq9A 397 1.49e-05 b.69.4.1 105889 2aq5A 402 1.56e-05 3f3fA 351 2.20e-05 2p4oA 306 2.30e-05 b.68.6.3 149216 2pm7B 297 2.45e-05 1p22A 435 3.09e-05 a.158.1.1,b.69.4.1 87715,87716 3dw8B 447 3.29e-05 3hrpA 409 4.74e-05 1ri6A 343 9.18e-05 b.69.11.1 97503 3c99A 432 0.000127 3cfsB 414 0.000133 2w18A 356 0.000138 3gfcA 425 0.000160 2ojhA 297 0.000304 3e5zA 296 0.000388 1pbyB 337 0.000423 b.69.2.2 94422 3i1cA 324 0.000489 2hqsA 415 0.000628 b.68.4.1,c.51.2.1 136662,136663 2dg1A 333 0.000980 b.68.6.1 131493 3li5A 314 0.000987 3elqA 571 0.000994 3li4A 314 0.001074 2oajA 902 0.001266 1kb0A 677 0.001378 a.3.1.6,b.70.1.1 68378,68379 1k32A 1045 0.001556 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3g4eA 297 0.002534 1g72A 573 0.002630 b.70.1.1 27680 3kyaA 496 0.002747 1yiqA 689 0.004326 2gc7A 386 0.004440 b.69.2.1 134954 3li3A 314 0.004521 1n6eA 1071 0.005054 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1w6sA 599 0.005435 b.70.1.1 114284 1kv9A 668 0.005487 a.3.1.6,b.70.1.1 73056,73057 1lrwA 600 0.005514 b.70.1.1 91111 1jmxB 349 0.006458 b.69.2.2 66906 2ghsA 326 0.008532 b.68.6.1 135209 3hfqA 347 0.009397 1pjxA 314 0.01148 b.68.6.1 104167 2qe8A 343 0.01781 3dr2A 305 0.01810 2ad6A 571 0.02586 b.70.1.1 126568 2be1A 339 0.03038 3fgbA 361 0.03140 1orvA 728 0.03175 b.70.3.1,c.69.1.24 87354,87355 3dsmA 328 0.04333 2p9wA 334 0.04740 1v04A 355 0.08266 b.68.6.2 100240 1yr2A 741 0.09334 3hacA 728 0.1412 2d5lA 706 0.1422 1e8nA 710 0.1654 b.69.7.1,c.69.1.4 27675,34643 2bklA 695 0.2094 3g0bA 740 0.2492 1jofA 365 0.2843 b.69.10.1 71775 2oizA 361 0.4132 3dasA 347 0.4333 2jkbA 686 0.4459 2sliA 679 0.5620 b.29.1.9,b.68.1.1 24274,27611 2z3zA 706 0.5881 2gopA 347 0.6339 2iwaA 266 0.6739 1xipA 388 0.6775 b.69.14.1 115360 2iaaA 390 0.7325 1h2wA 710 0.7692 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 0.8105 b.69.7.1,c.69.1.4 81087,81088 3c75H 426 1.701 2ismA 352 1.819 1xfdA 723 1.838 b.70.3.1,c.69.1.24 115251,115252 2bibA 547 1.848 b.109.1.1,d.157.1.8 128581,128582 2g8sA 353 1.946 3c5mA 396 2.025 1k3iA 656 2.200 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 2.526 b.69.7.2,c.69.1.33 151278,151279 1utcA 363 2.656 a.118.1.4,b.69.6.1 99914,99915 3llpA 493 2.895 2iwkA 642 2.929 1bfgA 146 2.934 b.42.1.1 25485 3ah2A 288 2.941 2hyxA 352 3.075 2ww5A 468 3.443 2v05A 311 3.545 1mt6A 280 3.979 b.76.2.1,b.85.7.1 79446,79447 2agyA 361 5.280 2b5nA 323 5.999 3hihA 223 7.192 1npeA 267 7.732 b.68.5.1 92032 3dohA 380 7.800 2fluX 308 8.974 b.68.11.1 133750 1h2xA 710 9.97 b.69.7.1,c.69.1.4 76598,76599 3b7fA 394 10.50 1w8oA 601 10.84 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3e0cA 1140 11.20 1n1tA 641 11.34 b.29.1.15,b.68.1.1 79821,79822 1wp5A 323 11.51 b.68.10.1 114780 2eceA 462 11.59 2vpjA 301 12.20 2j8gA 339 12.76 b.109.1.1,c.1.8.8 147915,147916 1r17A 343 12.76 b.2.3.4,b.2.3.4 96796,96797 1uf5A 303 13.25 d.160.1.2 107808 2w38A 438 13.41 1uypA 432 14.03 b.29.1.19,b.67.2.3 100176,100177 1h09A 338 14.11 b.109.1.1,c.1.8.8 83420,83421 2wozA 318 14.50 3fvhA 237 15.70 1zvtA 256 15.97 1h3iA 293 18.46 b.76.2.1,b.85.7.1 76635,76636 1sqjA 789 19.07 b.69.13.1,b.69.13.1 105918,105919 2uxyA 341 19.71 2biwA 490 20.23 1barA 140 20.52 b.42.1.1 25504 1wcqA 601 20.81 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2vw2A 697 20.83 1x2jA 316 20.86 b.68.11.1 121643 1ybiA 288 21.13 1w2tA 432 21.24 b.29.1.19,b.67.2.3 120607,120608 2fp8A 322 22.97 1iwlA 182 23.33 b.125.1.1 83757 3c12A 138 24.33 1rwhA 757 25.23 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2z1pA 348 25.59 2j04B 524 25.73 1suuA 312 26.44 b.68.10.1 99006 1zgsA 447 26.50 3silA 379 28.51 b.68.1.1 27542 2dyuA 334 29.51 3kf5A 512 31.26 2pooA 355 32.66 b.68.3.1 27626 3c7fA 487 32.86 2w7qA 204 34.81 2pz4A 239 35.87 3cu9A 314 36.76 3kf3A 509 37.10 2dpfA 115 37.96 2w5nA 367 38.04 2hu5A 582 38.17 b.69.7.2,c.69.1.33 136763,136764 2r7dA 469 40.56 b.40.4.5,b.40.4.16 151629,151630 3kciA 389 40.83 1vh5A 148 41.94 d.38.1.5 100642 1vclA 432 42.30 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2qpzA 103 42.87 1zboA 210 45.52 b.122.1.10 124859 3ddjA 296 45.52 d.37.1.1,d.37.1.1 157553,157554 2v2gA 233 46.17 1zi0A 307 46.82 2e4qA 109 47.55 1fwxA 595 50.71 b.6.1.4,b.69.3.1 60069,60070 1rieA 129 51.08 b.33.1.1 24427 1f89A 291 52.27 d.160.1.1 64988 3c8cA 240 52.52 2cavA 445 52.76 b.82.1.2,b.82.1.2 28094,28095 2jd4A 383 53.84 3l6vA 370 57.25 2wadA 680 59.07 3kstA 306 60.91 2wg4B 457 60.96 1zgkA 308 61.23 b.68.11.1 145998 1so7A 382 61.42 b.68.1.1 112106 1umwA 237 62.95 d.223.1.2,d.223.1.2 99631,99632 2rq9A 143 63.47 2qf2A 624 65.93 3hn3A 613 66.23 3f6kA 685 66.63 3a0eA 110 67.00 3hikA 237 68.40 1s1dA 331 69.45 b.67.3.1 98344 3e29A 144 70.43 1f1xA 322 70.93 d.32.1.3,d.32.1.3 83208,83209 2zxqA 1376 72.18 3etrC 755 75.41 2i7fA 108 77.38 3dzwA 109 77.43 3c0wA 235 77.63 2ouxA 286 77.73 a.118.26.1,d.37.1.1 149031,149032 2p25A 126 78.37 1yoxA 250 80.62 b.82.5.2 123789 3h6jA 438 80.93 2w20A 471 80.96 3gm8A 801 81.29 3d5yA 314 81.44 1fnyA 237 81.51 b.29.1.1 59920 3kxrA 205 83.10 1f5fA 205 83.60 b.29.1.4 24222 2w1vA 276 84.45 1h6lA 353 86.14 b.68.3.1 60687 3kd4A 506 86.27 2ea7A 434 87.77 3gc3B 363 88.11 3lwxA 199 89.00 3fosA 214 89.12