# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 1.24e-11 2h14A 317 1.57e-11 3hxjA 330 4.25e-11 1gxrA 337 5.68e-11 b.69.4.1 70722 2gnqA 336 6.34e-11 1a0rB 340 1.10e-10 b.69.4.1 27658 1gotB 340 1.20e-10 b.69.4.1 27648 1q7fA 286 1.27e-10 b.68.9.1 96036 1nr0A 611 1.30e-10 b.69.4.1,b.69.4.1 86078,86079 1r5mA 425 1.32e-10 2bcjB 340 1.45e-10 b.69.4.1 128289 3dxkC 372 1.92e-10 2pbiB 354 1.99e-10 3frxA 319 2.53e-10 2qc5A 300 5.11e-10 3acpA 417 5.64e-10 3fvzA 329 8.67e-10 3ei4B 436 9.08e-10 3greA 437 1.17e-09 2z2nA 299 1.22e-09 1yfqA 342 1.26e-09 b.69.4.2 116680 1k8kC 372 1.91e-09 b.69.4.1 68308 1pguA 615 2.09e-09 b.69.4.1,b.69.4.1 88069,88070 3fm0A 345 2.45e-09 1nexB 464 3.76e-09 a.158.1.1,b.69.4.1 80443,80444 1l0qA 391 4.00e-09 b.1.3.1,b.69.2.3 77644,77645 2p4oA 306 4.84e-09 b.68.6.3 149216 3ei3B 383 6.25e-09 1u4cA 349 6.59e-09 b.69.4.2 107666 2ovrB 445 6.65e-09 a.158.1.1,b.69.4.1 145735,145736 2oitA 434 7.46e-09 3i2nA 357 1.02e-08 3k26A 366 1.20e-08 3dwlC 377 1.23e-08 3iiwA 365 1.82e-08 2qxvA 361 1.84e-08 3bwsA 433 2.77e-08 1s4uX 407 2.97e-08 b.69.4.1 112027 2hesX 330 3.88e-08 1rwiA 270 4.43e-08 b.68.9.1 97987 3elqA 571 5.67e-08 3hrpA 409 8.86e-08 2aq5A 402 1.64e-07 2vduB 450 1.70e-07 3dw8B 447 1.71e-07 1p22A 435 2.48e-07 a.158.1.1,b.69.4.1 87715,87716 3f3fA 351 3.03e-07 2pm7B 297 3.95e-07 2w18A 356 4.65e-07 1k32A 1045 5.13e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1sq9A 397 6.51e-07 b.69.4.1 105889 1ri6A 343 9.43e-07 b.69.11.1 97503 3c99A 432 9.84e-07 3e5zA 296 2.33e-06 3cfsB 414 2.90e-06 2dg1A 333 3.07e-06 b.68.6.1 131493 2hqsA 415 4.22e-06 b.68.4.1,c.51.2.1 136662,136663 3gfcA 425 4.96e-06 1pbyB 337 6.41e-06 b.69.2.2 94422 2ojhA 297 6.75e-06 3i1cA 324 7.92e-06 1n6eA 1071 1.24e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1kb0A 677 1.34e-05 a.3.1.6,b.70.1.1 68378,68379 2oajA 902 1.36e-05 3li4A 314 1.74e-05 3g4eA 297 2.18e-05 1yiqA 689 2.46e-05 3li5A 314 3.16e-05 3kyaA 496 5.30e-05 2ad6A 571 6.21e-05 b.70.1.1 126568 2gc7A 386 7.88e-05 b.69.2.1 134954 1kv9A 668 0.000111 a.3.1.6,b.70.1.1 73056,73057 3li3A 314 0.000119 2ghsA 326 0.000142 b.68.6.1 135209 1lrwA 600 0.000159 b.70.1.1 91111 1jmxB 349 0.000192 b.69.2.2 66906 3dr2A 305 0.000328 1pjxA 314 0.000422 b.68.6.1 104167 1g72A 573 0.000602 b.70.1.1 27680 1w6sA 599 0.000926 b.70.1.1 114284 3fgbA 361 0.000927 2p9wA 334 0.002018 3hfqA 347 0.002110 2d5lA 706 0.002280 2z3zA 706 0.003965 3dsmA 328 0.004971 2qe8A 343 0.01053 2be1A 339 0.01227 1v04A 355 0.01384 b.68.6.2 100240 1orvA 728 0.02273 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 0.04749 3hacA 728 0.06052 1xfdA 723 0.07148 b.70.3.1,c.69.1.24 115251,115252 3c5mA 396 0.07788 1o6gA 710 0.08291 b.69.7.1,c.69.1.4 81087,81088 1jofA 365 0.08363 b.69.10.1 71775 3g0bA 740 0.08423 2iwkA 642 0.08810 1e8nA 710 0.1039 b.69.7.1,c.69.1.4 27675,34643 2iwaA 266 0.1127 2oizA 361 0.1447 2iaaA 390 0.1536 2gopA 347 0.1570 2qr5A 582 0.1767 b.69.7.2,c.69.1.33 151278,151279 2ww5A 468 0.1972 2hyxA 352 0.2154 1bfgA 146 0.2502 b.42.1.1 25485 2bklA 695 0.2744 3c75H 426 0.2788 2agyA 361 0.3469 2hu5A 582 0.3698 b.69.7.2,c.69.1.33 136763,136764 3e0cA 1140 0.8786 2g8sA 353 1.169 1xipA 388 1.443 b.69.14.1 115360 1h2xA 710 1.593 b.69.7.1,c.69.1.4 76598,76599 3dohA 380 1.747 3llpA 493 2.018 2ismA 352 2.073 3dasA 347 2.248 3hihA 223 2.294 2b5nA 323 2.493 2v05A 311 2.510 1h2wA 710 3.620 b.69.7.1,c.69.1.4 76596,76597 1mt6A 280 3.998 b.76.2.1,b.85.7.1 79446,79447 3ei3A 1158 4.189 1w8oA 601 4.774 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2fp8A 322 5.356 2zwaA 695 5.969 1wcqA 601 6.109 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2fluX 308 6.169 b.68.11.1 133750 2j8gA 339 6.393 b.109.1.1,c.1.8.8 147915,147916 1npeA 267 6.790 b.68.5.1 92032 1sqjA 789 7.122 b.69.13.1,b.69.13.1 105918,105919 2wozA 318 7.801 3fvhA 237 8.421 3ii7A 306 8.445 1cruA 454 8.881 b.68.2.1 27617 3ah2A 288 9.089 2vpjA 301 9.306 2j04B 524 9.916 2bibA 547 9.941 b.109.1.1,d.157.1.8 128581,128582 2jd4A 383 10.26 1utcA 363 10.76 a.118.1.4,b.69.6.1 99914,99915 3b7fA 394 10.92 1r17A 343 11.69 b.2.3.4,b.2.3.4 96796,96797 1x2jA 316 11.92 b.68.11.1 121643 3c12A 138 12.66 2sliA 679 13.76 b.29.1.9,b.68.1.1 24274,27611 2cn3A 737 15.13 1ms9A 648 15.86 b.29.1.15,b.68.1.1 85088,85089 1iwlA 182 15.98 b.125.1.1 83757 3c8cA 240 16.15 3f6kA 685 16.32 1barA 140 16.69 b.42.1.1 25504 2eceA 462 17.18 1suuA 312 18.11 b.68.10.1 99006 1wp5A 323 18.65 b.68.10.1 114780 2jkbA 686 21.32 2p25A 126 21.77 2w38A 438 22.31 3hikA 237 22.49 2rq9A 143 24.91 1uf5A 303 25.49 d.160.1.2 107808 1fwxA 595 25.62 b.6.1.4,b.69.3.1 60069,60070 2uxyA 341 27.25 2ebsA 789 27.88 b.69.13.1,b.69.13.1 146772,146773 2aukA 190 29.00 2zuyA 620 29.73 2zuxA 591 31.15 2e4qA 109 32.53 2w20A 471 33.17 2qpzA 103 33.73 2i7fA 108 35.96 2bmoA 447 36.04 b.33.1.2,d.129.3.3 128804,128805 2rliA 171 36.78 3gc3B 363 36.83 1afcA 140 38.41 b.42.1.1 25506 2biwA 490 38.80 2fdbM 164 40.55 b.42.1.1 145162 1zboA 210 40.58 b.122.1.10 124859 1hx0A 496 42.30 b.71.1.1,c.1.8.1 61346,61347 2pooA 355 42.37 b.68.3.1 27626 2bv4A 113 43.91 2p39A 155 46.36 2ggtA 164 46.79 c.47.1.10 135156 3g6jA 644 47.03 2dpfA 115 47.67 2z1pA 348 48.22 2chhA 114 48.80 b.115.1.1 130471 2yugA 155 49.26 1h09A 338 51.12 b.109.1.1,c.1.8.8 83420,83421 3dzwA 109 51.15 2w7qA 204 51.91 1o7nA 449 52.37 b.33.1.2,d.129.3.3 81162,81163 2v2gA 233 54.07 2vhhA 405 55.00 1upsA 420 57.48 b.29.1.2,b.42.2.3 113394,113395 2wjsA 608 57.93 3kstA 306 58.48 1h3iA 293 59.53 b.76.2.1,b.85.7.1 76635,76636 1yoxA 250 60.35 b.82.5.2 123789 1h6lA 353 61.67 b.68.3.1 60687 1zgkA 308 63.42 b.68.11.1 145998 2w5nA 367 64.30 3silA 379 66.27 b.68.1.1 27542 2wiiA 645 68.73 3h6jA 438 69.45 1h30A 422 70.13 b.29.1.4,b.29.1.4 76604,76605 4fgf 146 74.31 2vnlA 151 75.47 1n1tA 641 76.42 b.29.1.15,b.68.1.1 79821,79822 2f6eA 127 77.02 1okjA 251 77.37 c.55.1.9,c.55.1.9 103998,103999 3dqyA 106 77.83 1ybiA 288 78.06 2b1xA 470 78.36 b.33.1.2,d.129.3.3 127675,127676 1k3xA 262 80.26 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1gydB 315 87.01 b.67.2.1 70751 1at0A 145 88.64 b.86.1.1 28374 1f89A 291 88.92 d.160.1.1 64988