# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 8.55e-11 2h14A 317 8.81e-11 1gxrA 337 2.59e-10 b.69.4.1 70722 1a0rB 340 3.04e-10 b.69.4.1 27658 2gnqA 336 3.43e-10 2bcjB 340 3.72e-10 b.69.4.1 128289 2pbiB 354 4.81e-10 3dxkC 372 5.51e-10 3hxjA 330 6.37e-10 3ei4B 436 8.95e-10 1gotB 340 9.20e-10 b.69.4.1 27648 3frxA 319 9.42e-10 1nr0A 611 9.64e-10 b.69.4.1,b.69.4.1 86078,86079 1r5mA 425 1.11e-09 3acpA 417 1.83e-09 1q7fA 286 2.21e-09 b.68.9.1 96036 3greA 437 2.76e-09 3fvzA 329 3.79e-09 1yfqA 342 4.30e-09 b.69.4.2 116680 1k8kC 372 6.26e-09 b.69.4.1 68308 1nexB 464 1.04e-08 a.158.1.1,b.69.4.1 80443,80444 1pguA 615 1.25e-08 b.69.4.1,b.69.4.1 88069,88070 2qc5A 300 1.45e-08 3fm0A 345 1.55e-08 3ei3B 383 1.70e-08 3k26A 366 1.77e-08 3i2nA 357 2.01e-08 1u4cA 349 2.23e-08 b.69.4.2 107666 2z2nA 299 2.48e-08 2ovrB 445 2.83e-08 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 3.07e-08 2oitA 434 3.12e-08 3dwlC 377 3.38e-08 2p4oA 306 3.44e-08 b.68.6.3 149216 2qxvA 361 6.28e-08 1l0qA 391 6.30e-08 b.1.3.1,b.69.2.3 77644,77645 1s4uX 407 1.11e-07 b.69.4.1 112027 2hesX 330 1.47e-07 3dw8B 447 2.00e-07 2vduB 450 2.24e-07 3bwsA 433 2.82e-07 2aq5A 402 3.20e-07 2pm7B 297 4.76e-07 1p22A 435 5.02e-07 a.158.1.1,b.69.4.1 87715,87716 3elqA 571 5.37e-07 1rwiA 270 6.83e-07 b.68.9.1 97987 3hrpA 409 6.97e-07 3f3fA 351 7.92e-07 3c99A 432 1.17e-06 2w18A 356 1.88e-06 3cfsB 414 2.18e-06 1k32A 1045 2.37e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1sq9A 397 2.45e-06 b.69.4.1 105889 3gfcA 425 4.35e-06 1ri6A 343 6.11e-06 b.69.11.1 97503 2dg1A 333 1.88e-05 b.68.6.1 131493 2ojhA 297 2.27e-05 3e5zA 296 2.42e-05 2hqsA 415 2.89e-05 b.68.4.1,c.51.2.1 136662,136663 1pbyB 337 2.92e-05 b.69.2.2 94422 1kb0A 677 5.27e-05 a.3.1.6,b.70.1.1 68378,68379 3i1cA 324 5.46e-05 3li4A 314 6.46e-05 2oajA 902 6.69e-05 1yiqA 689 6.74e-05 3li5A 314 9.64e-05 1kv9A 668 0.000108 a.3.1.6,b.70.1.1 73056,73057 1n6eA 1071 0.000158 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 3kyaA 496 0.000167 3g4eA 297 0.000191 2ad6A 571 0.000245 b.70.1.1 126568 1lrwA 600 0.000314 b.70.1.1 91111 3li3A 314 0.000381 2gc7A 386 0.000452 b.69.2.1 134954 1jmxB 349 0.000653 b.69.2.2 66906 3dr2A 305 0.001682 1w6sA 599 0.002527 b.70.1.1 114284 1pjxA 314 0.003148 b.68.6.1 104167 2ghsA 326 0.003282 b.68.6.1 135209 1g72A 573 0.003351 b.70.1.1 27680 3fgbA 361 0.006752 2d5lA 706 0.009490 2p9wA 334 0.01230 3hfqA 347 0.01547 2z3zA 706 0.01675 3dsmA 328 0.02981 2qe8A 343 0.03584 2be1A 339 0.04563 1orvA 728 0.05395 b.70.3.1,c.69.1.24 87354,87355 3hacA 728 0.07501 3c5mA 396 0.08853 1xfdA 723 0.09039 b.70.3.1,c.69.1.24 115251,115252 3g0bA 740 0.09385 1yr2A 741 0.09412 1v04A 355 0.09650 b.68.6.2 100240 1o6gA 710 0.1879 b.69.7.1,c.69.1.4 81087,81088 2hyxA 352 0.1959 2iwkA 642 0.2637 2qr5A 582 0.2850 b.69.7.2,c.69.1.33 151278,151279 1e8nA 710 0.3128 b.69.7.1,c.69.1.4 27675,34643 2iwaA 266 0.3158 1jofA 365 0.4428 b.69.10.1 71775 2ww5A 468 0.4518 2iaaA 390 0.4955 2gopA 347 0.8905 2oizA 361 0.9313 2bklA 695 1.029 2hu5A 582 1.055 b.69.7.2,c.69.1.33 136763,136764 3c75H 426 1.491 2agyA 361 1.580 2b5nA 323 1.603 1bfgA 146 1.824 b.42.1.1 25485 2g8sA 353 2.299 3e0cA 1140 2.887 3dasA 347 3.064 1mt6A 280 3.130 b.76.2.1,b.85.7.1 79446,79447 3dohA 380 3.298 3hihA 223 3.483 1h2xA 710 4.705 b.69.7.1,c.69.1.4 76598,76599 1w8oA 601 4.984 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1xipA 388 5.721 b.69.14.1 115360 2zwaA 695 6.388 2j8gA 339 7.077 b.109.1.1,c.1.8.8 147915,147916 2wozA 318 7.799 3c8cA 240 7.842 2fluX 308 8.908 b.68.11.1 133750 2vpjA 301 9.092 3b7fA 394 10.19 3ii7A 306 10.30 2fp8A 322 10.41 2ismA 352 11.28 1wcqA 601 11.40 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 3llpA 493 12.02 2v05A 311 12.16 1r17A 343 12.55 b.2.3.4,b.2.3.4 96796,96797 2sliA 679 14.06 b.29.1.9,b.68.1.1 24274,27611 2jd4A 383 14.86 2eceA 462 15.15 2ebsA 789 15.61 b.69.13.1,b.69.13.1 146772,146773 3fvhA 237 15.77 1h3iA 293 16.62 b.76.2.1,b.85.7.1 76635,76636 1cruA 454 17.57 b.68.2.1 27617 3ei3A 1158 18.01 2bibA 547 18.45 b.109.1.1,d.157.1.8 128581,128582 1x2jA 316 19.05 b.68.11.1 121643 1ms9A 648 20.17 b.29.1.15,b.68.1.1 85088,85089 3c12A 138 20.36 1sqjA 789 23.79 b.69.13.1,b.69.13.1 105918,105919 2z1pA 348 24.27 1n1tA 641 24.33 b.29.1.15,b.68.1.1 79821,79822 1h2wA 710 24.58 b.69.7.1,c.69.1.4 76596,76597 1iwlA 182 26.75 b.125.1.1 83757 3f6kA 685 27.10 2cn3A 737 27.96 3hikA 237 29.32 3ah2A 288 30.30 1fwxA 595 31.33 b.6.1.4,b.69.3.1 60069,60070 2p25A 126 31.69 2w38A 438 32.80 2j04B 524 34.48 2qpzA 103 34.48 1uf5A 303 36.17 d.160.1.2 107808 2e4qA 109 36.52 2w20A 471 37.95 2rliA 171 38.43 2uxyA 341 39.03 1h09A 338 40.10 b.109.1.1,c.1.8.8 83420,83421 2v2gA 233 40.30 2i7fA 108 42.74 1w2tA 432 43.43 b.29.1.19,b.67.2.3 120607,120608 1zboA 210 44.28 b.122.1.10 124859 2wjsA 608 45.96 1barA 140 47.62 b.42.1.1 25504 2biwA 490 48.68 1npeA 267 49.07 b.68.5.1 92032 1utcA 363 56.14 a.118.1.4,b.69.6.1 99914,99915 2pz4A 239 56.36 2rq9A 143 58.38 1upsA 420 59.10 b.29.1.2,b.42.2.3 113394,113395 3kh7A 176 67.25 2bmoA 447 67.47 b.33.1.2,d.129.3.3 128804,128805 3kf5A 512 69.24 1gmiA 136 74.70 b.7.1.1 65309 2ggtA 164 76.62 c.47.1.10 135156 1gyoA 109 78.75 a.138.1.1 70763 3gdcA 288 79.27 3ci6A 171 82.68 3dqyA 106 85.11 2b1xA 470 85.56 b.33.1.2,d.129.3.3 127675,127676 1umwA 237 87.38 d.223.1.2,d.223.1.2 99631,99632 1xzoA 174 89.90 c.47.1.10 122474 2uvkA 357 89.92