# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 2.49e-13 2h14A 317 4.71e-13 3hxjA 330 1.17e-12 2gnqA 336 3.12e-12 1gxrA 337 3.16e-12 b.69.4.1 70722 1q7fA 286 3.67e-12 b.68.9.1 96036 1nr0A 611 6.44e-12 b.69.4.1,b.69.4.1 86078,86079 1gotB 340 7.65e-12 b.69.4.1 27648 2qc5A 300 7.68e-12 1a0rB 340 7.69e-12 b.69.4.1 27658 3dxkC 372 7.96e-12 1r5mA 425 9.91e-12 2pbiB 354 1.39e-11 2bcjB 340 1.54e-11 b.69.4.1 128289 2z2nA 299 2.07e-11 3frxA 319 2.40e-11 3acpA 417 5.38e-11 3fvzA 329 6.31e-11 1k8kC 372 1.38e-10 b.69.4.1 68308 3ei4B 436 1.47e-10 3greA 437 1.55e-10 1l0qA 391 2.74e-10 b.1.3.1,b.69.2.3 77644,77645 1yfqA 342 2.92e-10 b.69.4.2 116680 1pguA 615 4.89e-10 b.69.4.1,b.69.4.1 88069,88070 3fm0A 345 5.13e-10 1nexB 464 6.61e-10 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 7.50e-10 3k26A 366 7.84e-10 2ovrB 445 8.24e-10 a.158.1.1,b.69.4.1 145735,145736 2p4oA 306 9.75e-10 b.68.6.3 149216 1u4cA 349 1.57e-09 b.69.4.2 107666 3iiwA 365 1.71e-09 3dwlC 377 2.00e-09 3i2nA 357 2.83e-09 3bwsA 433 3.26e-09 2qxvA 361 3.51e-09 1rwiA 270 4.17e-09 b.68.9.1 97987 2oitA 434 4.93e-09 1s4uX 407 8.91e-09 b.69.4.1 112027 3elqA 571 9.44e-09 2hesX 330 1.40e-08 3dw8B 447 1.73e-08 2aq5A 402 2.08e-08 2vduB 450 2.24e-08 3hrpA 409 3.31e-08 2w18A 356 4.60e-08 2pm7B 297 5.70e-08 1k32A 1045 7.88e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3f3fA 351 1.34e-07 1p22A 435 1.76e-07 a.158.1.1,b.69.4.1 87715,87716 3e5zA 296 2.10e-07 1sq9A 397 2.48e-07 b.69.4.1 105889 2hqsA 415 4.17e-07 b.68.4.1,c.51.2.1 136662,136663 3i1cA 324 4.42e-07 2ojhA 297 4.95e-07 3c99A 432 5.19e-07 1ri6A 343 5.53e-07 b.69.11.1 97503 3cfsB 414 9.54e-07 3li4A 314 9.73e-07 1n6eA 1071 9.79e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2dg1A 333 1.11e-06 b.68.6.1 131493 3gfcA 425 1.17e-06 1pbyB 337 1.23e-06 b.69.2.2 94422 1yiqA 689 2.06e-06 1kb0A 677 3.11e-06 a.3.1.6,b.70.1.1 68378,68379 3li5A 314 3.90e-06 2oajA 902 4.19e-06 3g4eA 297 5.25e-06 3li3A 314 9.30e-06 2gc7A 386 1.13e-05 b.69.2.1 134954 3kyaA 496 1.49e-05 1kv9A 668 1.53e-05 a.3.1.6,b.70.1.1 73056,73057 2ghsA 326 1.98e-05 b.68.6.1 135209 3dr2A 305 2.58e-05 2ad6A 571 2.97e-05 b.70.1.1 126568 1pjxA 314 3.61e-05 b.68.6.1 104167 1lrwA 600 4.50e-05 b.70.1.1 91111 1jmxB 349 6.38e-05 b.69.2.2 66906 1g72A 573 0.000173 b.70.1.1 27680 1w6sA 599 0.000231 b.70.1.1 114284 3fgbA 361 0.000651 2p9wA 334 0.000914 3hfqA 347 0.001625 2be1A 339 0.001728 3dsmA 328 0.003159 2d5lA 706 0.003878 2z3zA 706 0.005025 2qe8A 343 0.007901 1xfdA 723 0.02348 b.70.3.1,c.69.1.24 115251,115252 1v04A 355 0.02515 b.68.6.2 100240 2qr5A 582 0.03392 b.69.7.2,c.69.1.33 151278,151279 1yr2A 741 0.03704 1orvA 728 0.03885 b.70.3.1,c.69.1.24 87354,87355 2gopA 347 0.04296 2ww5A 468 0.04691 2oizA 361 0.05403 2iwaA 266 0.05577 2iaaA 390 0.06133 3g0bA 740 0.08620 2hyxA 352 0.09255 1o6gA 710 0.1104 b.69.7.1,c.69.1.4 81087,81088 3c5mA 396 0.1174 2iwkA 642 0.1253 3hacA 728 0.1279 1e8nA 710 0.1953 b.69.7.1,c.69.1.4 27675,34643 1bfgA 146 0.2050 b.42.1.1 25485 2agyA 361 0.2198 1jofA 365 0.3277 b.69.10.1 71775 3c75H 426 0.3456 2bklA 695 0.3745 1h2xA 710 0.4062 b.69.7.1,c.69.1.4 76598,76599 1npeA 267 0.4506 b.68.5.1 92032 2hu5A 582 0.5429 b.69.7.2,c.69.1.33 136763,136764 3e0cA 1140 1.141 2b5nA 323 1.254 2v05A 311 1.450 1xipA 388 1.786 b.69.14.1 115360 1h2wA 710 1.855 b.69.7.1,c.69.1.4 76596,76597 3dasA 347 2.266 2ismA 352 2.830 3c8cA 240 2.910 2g8sA 353 3.070 1wcqA 601 3.071 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 3llpA 493 3.414 3hihA 223 3.460 2bibA 547 3.617 b.109.1.1,d.157.1.8 128581,128582 3ei3A 1158 3.738 2fp8A 322 3.762 3dohA 380 3.776 2j8gA 339 5.038 b.109.1.1,c.1.8.8 147915,147916 1r17A 343 5.456 b.2.3.4,b.2.3.4 96796,96797 1mt6A 280 5.614 b.76.2.1,b.85.7.1 79446,79447 1w8oA 601 6.313 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2uxyA 341 9.381 2fluX 308 10.63 b.68.11.1 133750 2rq9A 143 10.75 2jkbA 686 11.55 1barA 140 12.31 b.42.1.1 25504 3ah2A 288 12.85 2wozA 318 13.45 3ii7A 306 13.66 2e4qA 109 14.28 3c12A 138 15.61 2yugA 155 16.29 1h30A 422 17.48 b.29.1.4,b.29.1.4 76604,76605 2p25A 126 17.70 1x2jA 316 17.90 b.68.11.1 121643 2zwaA 695 17.90 1iwlA 182 18.22 b.125.1.1 83757 2aukA 190 18.95 2jd4A 383 19.56 1cruA 454 20.08 b.68.2.1 27617 1zboA 210 23.24 b.122.1.10 124859 3gc3B 363 23.97 2qpzA 103 24.70 2vpjA 301 25.13 2bmoA 447 25.99 b.33.1.2,d.129.3.3 128804,128805 2sliA 679 26.10 b.29.1.9,b.68.1.1 24274,27611 2i7fA 108 27.20 2w20A 471 27.31 1uf5A 303 27.67 d.160.1.2 107808 1ms9A 648 28.44 b.29.1.15,b.68.1.1 85088,85089 1fwxA 595 29.42 b.6.1.4,b.69.3.1 60069,60070 1hx0A 496 29.72 b.71.1.1,c.1.8.1 61346,61347 1o7nA 449 29.98 b.33.1.2,d.129.3.3 81162,81163 2cn3A 737 30.00 2ggtA 164 31.19 c.47.1.10 135156 1sqjA 789 31.43 b.69.13.1,b.69.13.1 105918,105919 1h09A 338 31.90 b.109.1.1,c.1.8.8 83420,83421 3fvhA 237 32.67 2j04B 524 33.80 2vnlA 151 34.07 2v2gA 233 35.14 1n1tA 641 36.00 b.29.1.15,b.68.1.1 79821,79822 1h8gA 95 40.25 b.109.1.1 65735 2zuxA 591 40.36 3dqyA 106 42.30 2eceA 462 43.17 3fosA 214 43.85 2zuyA 620 44.16 1f5fA 205 44.26 b.29.1.4 24222 1f89A 291 44.44 d.160.1.1 64988 2ebsA 789 45.01 b.69.13.1,b.69.13.1 146772,146773 2madH 373 46.58 b.69.2.1 27639 3kh7A 176 48.26 1afcA 140 49.66 b.42.1.1 25506 1utcA 363 50.43 a.118.1.4,b.69.6.1 99914,99915 1k3xA 262 54.07 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2rliA 171 54.53 2vw2A 697 56.43 2bv4A 113 59.01 2biwA 490 60.16 3g6jA 644 60.68 2w7qA 204 62.63 3ci6A 171 63.45 2qwvA 208 64.93 c.116.1.7 151439 2fdbM 164 65.78 b.42.1.1 145162 3hikA 237 66.07 1okjA 251 66.74 c.55.1.9,c.55.1.9 103998,103999 2w38A 438 66.93 2chhA 114 69.96 b.115.1.1 130471 3h6jA 438 71.99 1upsA 420 72.37 b.29.1.2,b.42.2.3 113394,113395 3hkxA 283 74.25 1itwA 741 74.31 c.77.1.2 76793 2dx0A 138 76.59 1suuA 312 77.15 b.68.10.1 99006 3b7fA 394 78.71 2vhhA 405 79.95 2exnA 136 80.18 b.165.1.1 132562 3f6kA 685 82.15 2wjsA 608 82.16 2o5fA 171 82.31 d.113.1.2 148596 2p39A 155 84.52 2f6eA 127 85.51 1xzoA 174 85.82 c.47.1.10 122474 1zn6A 227 86.68 d.303.1.1 125373 3l48A 94 87.28 1h3iA 293 88.64 b.76.2.1,b.85.7.1 76635,76636 4fgf 146 89.00 2qxlA 658 89.05 3b42A 135 89.76 1at0A 145 89.82 b.86.1.1 28374