# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 1.50e-12 2h14A 317 2.17e-12 2gnqA 336 1.02e-11 3hxjA 330 1.15e-11 1gxrA 337 1.25e-11 b.69.4.1 70722 1q7fA 286 2.23e-11 b.68.9.1 96036 1nr0A 611 2.41e-11 b.69.4.1,b.69.4.1 86078,86079 1a0rB 340 2.87e-11 b.69.4.1 27658 2bcjB 340 3.21e-11 b.69.4.1 128289 2pbiB 354 3.66e-11 1gotB 340 4.09e-11 b.69.4.1 27648 1r5mA 425 4.12e-11 2qc5A 300 4.31e-11 3dxkC 372 5.17e-11 3frxA 319 5.81e-11 2z2nA 299 1.08e-10 3acpA 417 1.35e-10 3fvzA 329 2.17e-10 3ei4B 436 2.31e-10 3greA 437 3.31e-10 1k8kC 372 6.35e-10 b.69.4.1 68308 1yfqA 342 7.07e-10 b.69.4.2 116680 1l0qA 391 7.17e-10 b.1.3.1,b.69.2.3 77644,77645 1pguA 615 8.83e-10 b.69.4.1,b.69.4.1 88069,88070 3fm0A 345 1.07e-09 1nexB 464 1.45e-09 a.158.1.1,b.69.4.1 80443,80444 3k26A 366 1.58e-09 2ovrB 445 1.70e-09 a.158.1.1,b.69.4.1 145735,145736 3ei3B 383 1.88e-09 2p4oA 306 2.50e-09 b.68.6.3 149216 3i2nA 357 2.57e-09 3iiwA 365 3.34e-09 3dwlC 377 3.58e-09 1u4cA 349 3.99e-09 b.69.4.2 107666 2oitA 434 5.87e-09 2qxvA 361 5.97e-09 1s4uX 407 7.34e-09 b.69.4.1 112027 3bwsA 433 1.01e-08 1rwiA 270 1.20e-08 b.68.9.1 97987 3elqA 571 1.47e-08 2hesX 330 1.59e-08 3dw8B 447 5.53e-08 2aq5A 402 6.06e-08 2vduB 450 6.25e-08 1p22A 435 7.17e-08 a.158.1.1,b.69.4.1 87715,87716 2pm7B 297 7.75e-08 1k32A 1045 8.26e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3hrpA 409 8.93e-08 2w18A 356 1.15e-07 3f3fA 351 2.23e-07 1sq9A 397 3.46e-07 b.69.4.1 105889 1ri6A 343 5.77e-07 b.69.11.1 97503 3c99A 432 6.06e-07 2hqsA 415 7.72e-07 b.68.4.1,c.51.2.1 136662,136663 3cfsB 414 1.25e-06 3e5zA 296 1.29e-06 2ojhA 297 1.37e-06 1n6eA 1071 1.53e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2dg1A 333 1.83e-06 b.68.6.1 131493 3i1cA 324 2.02e-06 1pbyB 337 2.22e-06 b.69.2.2 94422 3gfcA 425 2.50e-06 1kb0A 677 4.26e-06 a.3.1.6,b.70.1.1 68378,68379 3li4A 314 5.26e-06 1yiqA 689 6.54e-06 2oajA 902 7.17e-06 3g4eA 297 9.01e-06 3li5A 314 1.28e-05 1kv9A 668 1.52e-05 a.3.1.6,b.70.1.1 73056,73057 2ad6A 571 2.59e-05 b.70.1.1 126568 2gc7A 386 2.80e-05 b.69.2.1 134954 3kyaA 496 3.03e-05 3li3A 314 4.30e-05 1lrwA 600 5.27e-05 b.70.1.1 91111 2ghsA 326 5.64e-05 b.68.6.1 135209 1pjxA 314 6.30e-05 b.68.6.1 104167 3dr2A 305 7.38e-05 1jmxB 349 8.59e-05 b.69.2.2 66906 1w6sA 599 0.000170 b.70.1.1 114284 1g72A 573 0.000229 b.70.1.1 27680 3fgbA 361 0.001102 3hfqA 347 0.001446 2d5lA 706 0.001680 3dsmA 328 0.002266 2p9wA 334 0.002597 2be1A 339 0.003445 2z3zA 706 0.003884 2qe8A 343 0.01025 1xfdA 723 0.01261 b.70.3.1,c.69.1.24 115251,115252 2qr5A 582 0.01598 b.69.7.2,c.69.1.33 151278,151279 1orvA 728 0.02178 b.70.3.1,c.69.1.24 87354,87355 1v04A 355 0.02571 b.68.6.2 100240 1yr2A 741 0.02887 3c5mA 396 0.04279 2oizA 361 0.04806 2ww5A 468 0.07442 1e8nA 710 0.08194 b.69.7.1,c.69.1.4 27675,34643 2iaaA 390 0.09784 2iwaA 266 0.09890 1o6gA 710 0.1070 b.69.7.1,c.69.1.4 81087,81088 3g0bA 740 0.1077 2gopA 347 0.1117 2hu5A 582 0.1263 b.69.7.2,c.69.1.33 136763,136764 3hacA 728 0.1280 2bklA 695 0.1856 2agyA 361 0.2038 2hyxA 352 0.2038 1jofA 365 0.2063 b.69.10.1 71775 2iwkA 642 0.2417 1h2xA 710 0.3518 b.69.7.1,c.69.1.4 76598,76599 1npeA 267 0.3540 b.68.5.1 92032 1bfgA 146 0.5339 b.42.1.1 25485 2b5nA 323 0.5473 3c75H 426 0.5905 3dasA 347 0.6850 1xipA 388 0.9362 b.69.14.1 115360 1h2wA 710 1.094 b.69.7.1,c.69.1.4 76596,76597 3e0cA 1140 1.226 2g8sA 353 1.712 2v05A 311 1.946 3ei3A 1158 2.276 2ismA 352 2.566 3dohA 380 2.657 3hihA 223 2.838 2fluX 308 3.766 b.68.11.1 133750 2j8gA 339 4.076 b.109.1.1,c.1.8.8 147915,147916 3ii7A 306 4.990 1r17A 343 5.335 b.2.3.4,b.2.3.4 96796,96797 3c8cA 240 5.338 2bibA 547 5.403 b.109.1.1,d.157.1.8 128581,128582 2wozA 318 5.530 1wcqA 601 5.769 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1w8oA 601 6.130 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2zwaA 695 6.172 2vpjA 301 6.465 1x2jA 316 8.987 b.68.11.1 121643 2jd4A 383 9.007 1cruA 454 9.160 b.68.2.1 27617 2fp8A 322 9.220 1mt6A 280 9.726 b.76.2.1,b.85.7.1 79446,79447 2sliA 679 13.29 b.29.1.9,b.68.1.1 24274,27611 1n1tA 641 13.43 b.29.1.15,b.68.1.1 79821,79822 1ms9A 648 13.57 b.29.1.15,b.68.1.1 85088,85089 3llpA 493 14.06 2aukA 190 14.24 2uxyA 341 15.94 2qpzA 103 16.27 2e4qA 109 16.35 2i7fA 108 16.99 2j04B 524 18.02 1zboA 210 18.30 b.122.1.10 124859 2jkbA 686 18.44 3c12A 138 19.03 2p25A 126 19.85 2wjsA 608 20.01 3fvhA 237 20.40 1barA 140 20.89 b.42.1.1 25504 1iwlA 182 21.56 b.125.1.1 83757 2rq9A 143 22.25 1sqjA 789 23.07 b.69.13.1,b.69.13.1 105918,105919 3gc3B 363 23.13 3ah2A 288 24.41 2w38A 438 26.51 1utcA 363 27.37 a.118.1.4,b.69.6.1 99914,99915 1fwxA 595 27.83 b.6.1.4,b.69.3.1 60069,60070 2w20A 471 28.83 1uf5A 303 28.86 d.160.1.2 107808 2bv4A 113 28.95 2biwA 490 29.38 1f89A 291 29.67 d.160.1.1 64988 2chhA 114 29.81 b.115.1.1 130471 2cn3A 737 29.99 3f6kA 685 31.84 1h09A 338 34.64 b.109.1.1,c.1.8.8 83420,83421 2v2gA 233 34.82 2yugA 155 35.69 2zuxA 591 37.90 3b7fA 394 38.23 1f5fA 205 38.70 b.29.1.4 24222 2madH 373 38.83 b.69.2.1 27639 3dqyA 106 39.65 1o7nA 449 39.65 b.33.1.2,d.129.3.3 81162,81163 2vw2A 697 40.92 3hikA 237 42.58 2de6D 115 47.30 2eceA 462 49.79 2w1vA 276 50.27 1afcA 140 50.82 b.42.1.1 25506 1suuA 312 50.84 b.68.10.1 99006 2rliA 171 52.91 2bmoA 447 54.05 b.33.1.2,d.129.3.3 128804,128805 2h0bA 184 54.25 3fosA 214 54.53 1okjA 251 57.42 c.55.1.9,c.55.1.9 103998,103999 3hkxA 283 57.58 2ggtA 164 58.12 c.47.1.10 135156 2wiiA 645 62.07 1k3xA 262 63.00 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1mdaH 368 63.53 b.69.2.1 27637 1umwA 237 64.08 d.223.1.2,d.223.1.2 99631,99632 2vnlA 151 65.87 1h30A 422 65.88 b.29.1.4,b.29.1.4 76604,76605 1h8gA 95 66.61 b.109.1.1 65735 3h6jA 438 67.02 2w7qA 204 71.06 3ci6A 171 71.28 2z1pA 348 72.20 2vhhA 405 72.61 1itwA 741 72.81 c.77.1.2 76793 1zgkA 308 73.57 b.68.11.1 145998 2pooA 355 77.65 b.68.3.1 27626 3kh7A 176 81.04 3dczA 207 81.92 1upsA 420 82.82 b.29.1.2,b.42.2.3 113394,113395 1jiwI 106 84.26 b.61.2.1 63078 1wp5A 323 84.51 b.68.10.1 114780 2f6eA 127 84.74 3cnwA 148 84.83 d.129.3.8 156848 2dx0A 138 87.39