# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h14A 317 2.42e-12 3emhA 318 3.56e-12 2qc5A 300 6.35e-12 1gxrA 337 7.52e-12 b.69.4.1 70722 3hxjA 330 8.08e-12 2bcjB 340 8.66e-12 b.69.4.1 128289 1r5mA 425 9.17e-12 2gnqA 336 1.19e-11 1a0rB 340 1.20e-11 b.69.4.1 27658 1gotB 340 1.69e-11 b.69.4.1 27648 3dxkC 372 2.30e-11 1q7fA 286 3.63e-11 b.68.9.1 96036 2pbiB 354 3.78e-11 3frxA 319 3.91e-11 1yfqA 342 7.29e-11 b.69.4.2 116680 3ei4B 436 1.14e-10 2z2nA 299 1.19e-10 1nr0A 611 1.40e-10 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 1.68e-10 1k8kC 372 2.70e-10 b.69.4.1 68308 3acpA 417 3.28e-10 3greA 437 4.01e-10 1pguA 615 4.30e-10 b.69.4.1,b.69.4.1 88069,88070 3ei3B 383 4.69e-10 1u4cA 349 7.46e-10 b.69.4.2 107666 1rwiA 270 9.93e-10 b.68.9.1 97987 2ovrB 445 1.06e-09 a.158.1.1,b.69.4.1 145735,145736 1l0qA 391 1.08e-09 b.1.3.1,b.69.2.3 77644,77645 3i2nA 357 1.57e-09 1nexB 464 2.07e-09 a.158.1.1,b.69.4.1 80443,80444 2hesX 330 2.36e-09 3k26A 366 2.49e-09 3dwlC 377 2.53e-09 2p4oA 306 3.16e-09 b.68.6.3 149216 3fvzA 329 3.43e-09 3iiwA 365 4.31e-09 3bwsA 433 6.63e-09 2qxvA 361 9.15e-09 1k32A 1045 1.09e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2aq5A 402 1.79e-08 3hrpA 409 1.89e-08 1n6eA 1071 2.52e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2pm7B 297 4.60e-08 3f3fA 351 7.03e-08 1ri6A 343 1.03e-07 b.69.11.1 97503 2oitA 434 1.17e-07 2ojhA 297 1.77e-07 1p22A 435 1.85e-07 a.158.1.1,b.69.4.1 87715,87716 1s4uX 407 2.22e-07 b.69.4.1 112027 3dw8B 447 3.06e-07 2vduB 450 4.28e-07 1sq9A 397 5.98e-07 b.69.4.1 105889 2dg1A 333 6.83e-07 b.68.6.1 131493 3e5zA 296 7.70e-07 3cfsB 414 8.60e-07 2w18A 356 1.08e-06 1pbyB 337 1.28e-06 b.69.2.2 94422 3c99A 432 1.34e-06 2hqsA 415 1.75e-06 b.68.4.1,c.51.2.1 136662,136663 3i1cA 324 2.84e-06 3gfcA 425 2.98e-06 3g4eA 297 3.70e-06 3li4A 314 3.86e-06 3elqA 571 4.27e-06 3dr2A 305 1.28e-05 3li3A 314 2.62e-05 3kyaA 496 3.05e-05 3li5A 314 4.34e-05 1jmxB 349 5.10e-05 b.69.2.2 66906 3hfqA 347 6.64e-05 1pjxA 314 7.55e-05 b.68.6.1 104167 3fgbA 361 0.000138 2ghsA 326 0.000230 b.68.6.1 135209 3dsmA 328 0.000435 2gc7A 386 0.000461 b.69.2.1 134954 2oajA 902 0.000547 1orvA 728 0.001098 b.70.3.1,c.69.1.24 87354,87355 1v04A 355 0.001206 b.68.6.2 100240 1w6sA 599 0.001251 b.70.1.1 114284 2ad6A 571 0.001326 b.70.1.1 126568 1kv9A 668 0.001330 a.3.1.6,b.70.1.1 73056,73057 1xfdA 723 0.001486 b.70.3.1,c.69.1.24 115251,115252 1g72A 573 0.001763 b.70.1.1 27680 2qe8A 343 0.002603 2z3zA 706 0.005995 2p9wA 334 0.006629 2d5lA 706 0.007414 1yiqA 689 0.007471 3c5mA 396 0.009293 2b5nA 323 0.01357 1kb0A 677 0.01559 a.3.1.6,b.70.1.1 68378,68379 3g0bA 740 0.01574 1npeA 267 0.01612 b.68.5.1 92032 2be1A 339 0.01841 3hacA 728 0.01886 2qr5A 582 0.02404 b.69.7.2,c.69.1.33 151278,151279 1jofA 365 0.03095 b.69.10.1 71775 1lrwA 600 0.03959 b.70.1.1 91111 2hu5A 582 0.05946 b.69.7.2,c.69.1.33 136763,136764 1xipA 388 0.1041 b.69.14.1 115360 2agyA 361 0.1145 2ismA 352 0.1224 2iwaA 266 0.1712 2oizA 361 0.1894 1yr2A 741 0.1939 1o6gA 710 0.2393 b.69.7.1,c.69.1.4 81087,81088 1e8nA 710 0.2573 b.69.7.1,c.69.1.4 27675,34643 2iaaA 390 0.2582 2gopA 347 0.3264 3dasA 347 0.3315 1cruA 454 0.3443 b.68.2.1 27617 2vpjA 301 0.5176 3ii7A 306 0.6313 3e0cA 1140 0.6407 2zwaA 695 0.6669 1h2xA 710 0.7902 b.69.7.1,c.69.1.4 76598,76599 2fluX 308 0.8987 b.68.11.1 133750 1h2wA 710 0.9372 b.69.7.1,c.69.1.4 76596,76597 3c75H 426 1.165 3ei3A 1158 1.205 2bklA 695 1.287 2wozA 318 1.474 2fp8A 322 1.721 2vw2A 697 2.021 2ww5A 468 2.296 1bfgA 146 2.790 b.42.1.1 25485 2jkbA 686 4.160 1x2jA 316 4.342 b.68.11.1 121643 3ah2A 288 4.538 1zgkA 308 5.203 b.68.11.1 145998 3b7fA 394 6.065 3gc3B 363 6.268 2dpfA 115 7.331 2g8sA 353 8.110 2iwkA 642 8.673 2uvkA 357 9.143 1at0A 145 10.08 b.86.1.1 28374 3l6vA 370 12.70 1suuA 312 15.26 b.68.10.1 99006 2hyxA 352 16.72 2j04B 524 21.49 2w5nA 367 23.75 2pooA 355 24.68 b.68.3.1 27626 2v05A 311 25.94 1h4gA 207 26.42 b.29.1.11 70863 2d5fA 493 26.42 3llpA 493 26.45 3hihA 223 26.62 2fs3A 282 27.92 2vg9A 217 28.26 3dzwA 109 28.62 1s1dA 331 28.73 b.67.3.1 98344 2wftA 458 30.70 2rq9A 143 30.80 1wp5A 323 30.97 b.68.10.1 114780 2eceA 462 31.32 2w38A 438 33.40 1utcA 363 33.54 a.118.1.4,b.69.6.1 99914,99915 2zuxA 591 33.67 1b09A 206 35.34 b.29.1.5 24247 1olzA 663 37.17 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1zi0A 307 38.04 2cn3A 737 39.20 2aukA 190 40.28 2yugA 155 41.31 1mt6A 280 44.88 b.76.2.1,b.85.7.1 79446,79447 1h6lA 353 46.63 b.68.3.1 60687 2vgdA 218 48.59 2wg4B 457 49.40 1ynaA 194 52.33 b.29.1.11 24335 1fwxA 595 56.16 b.6.1.4,b.69.3.1 60069,60070 2c1fA 234 57.74 3fz3A 531 58.42 3c3vA 510 58.51 1ybiA 288 64.41 3hkxA 283 67.07 2sliA 679 75.66 b.29.1.9,b.68.1.1 24274,27611 2j04A 588 84.18 1itwA 741 86.68 c.77.1.2 76793 1mdaH 368 86.80 b.69.2.1 27637