# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 4.40e-12 2h14A 317 5.40e-12 2gnqA 336 1.75e-11 2qc5A 300 1.87e-11 1gxrA 337 1.94e-11 b.69.4.1 70722 2pbiB 354 2.03e-11 1a0rB 340 2.15e-11 b.69.4.1 27658 3hxjA 330 2.28e-11 3dxkC 372 2.50e-11 1gotB 340 2.50e-11 b.69.4.1 27648 1q7fA 286 2.73e-11 b.68.9.1 96036 2bcjB 340 3.24e-11 b.69.4.1 128289 1r5mA 425 5.49e-11 3ei4B 436 7.79e-11 3frxA 319 8.67e-11 1nr0A 611 9.90e-11 b.69.4.1,b.69.4.1 86078,86079 1yfqA 342 1.58e-10 b.69.4.2 116680 3acpA 417 1.94e-10 1k8kC 372 2.46e-10 b.69.4.1 68308 3greA 437 2.52e-10 2z2nA 299 4.40e-10 3ei3B 383 6.36e-10 3fm0A 345 8.30e-10 1u4cA 349 9.71e-10 b.69.4.2 107666 1pguA 615 1.13e-09 b.69.4.1,b.69.4.1 88069,88070 1rwiA 270 1.30e-09 b.68.9.1 97987 1l0qA 391 1.32e-09 b.1.3.1,b.69.2.3 77644,77645 3i2nA 357 2.12e-09 3dwlC 377 2.13e-09 3fvzA 329 2.27e-09 2p4oA 306 3.03e-09 b.68.6.3 149216 3k26A 366 4.50e-09 3iiwA 365 4.61e-09 3bwsA 433 5.21e-09 2ovrB 445 5.98e-09 a.158.1.1,b.69.4.1 145735,145736 2hesX 330 7.48e-09 1nexB 464 8.06e-09 a.158.1.1,b.69.4.1 80443,80444 2qxvA 361 1.37e-08 2aq5A 402 1.41e-08 3elqA 571 1.95e-08 2pm7B 297 2.25e-08 3hrpA 409 2.82e-08 1k32A 1045 4.95e-08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2oitA 434 6.94e-08 2ojhA 297 8.38e-08 3f3fA 351 1.48e-07 2dg1A 333 1.74e-07 b.68.6.1 131493 1n6eA 1071 1.80e-07 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 3dw8B 447 1.89e-07 1ri6A 343 1.92e-07 b.69.11.1 97503 2vduB 450 2.77e-07 1s4uX 407 2.97e-07 b.69.4.1 112027 3li4A 314 4.80e-07 3c99A 432 5.30e-07 2hqsA 415 7.45e-07 b.68.4.1,c.51.2.1 136662,136663 1p22A 435 7.73e-07 a.158.1.1,b.69.4.1 87715,87716 3cfsB 414 8.51e-07 1sq9A 397 8.68e-07 b.69.4.1 105889 3e5zA 296 1.01e-06 3i1cA 324 1.33e-06 2w18A 356 1.38e-06 3li5A 314 2.26e-06 3gfcA 425 2.70e-06 3li3A 314 4.34e-06 3kyaA 496 5.24e-06 1pbyB 337 5.63e-06 b.69.2.2 94422 3dr2A 305 6.03e-06 3g4eA 297 2.09e-05 1pjxA 314 6.07e-05 b.68.6.1 104167 1kv9A 668 0.000122 a.3.1.6,b.70.1.1 73056,73057 2ghsA 326 0.000139 b.68.6.1 135209 2gc7A 386 0.000205 b.69.2.1 134954 3fgbA 361 0.000224 3hfqA 347 0.000236 1jmxB 349 0.000240 b.69.2.2 66906 3dsmA 328 0.000331 1kb0A 677 0.000340 a.3.1.6,b.70.1.1 68378,68379 1g72A 573 0.000391 b.70.1.1 27680 2oajA 902 0.000420 1yiqA 689 0.000441 2ad6A 571 0.000515 b.70.1.1 126568 1w6sA 599 0.000545 b.70.1.1 114284 1v04A 355 0.001165 b.68.6.2 100240 1xfdA 723 0.001662 b.70.3.1,c.69.1.24 115251,115252 1orvA 728 0.001781 b.70.3.1,c.69.1.24 87354,87355 2z3zA 706 0.002549 2be1A 339 0.003106 1lrwA 600 0.003111 b.70.1.1 91111 2p9wA 334 0.003912 2qe8A 343 0.004837 3hacA 728 0.004867 2d5lA 706 0.008023 3g0bA 740 0.01048 1yr2A 741 0.01467 1npeA 267 0.01614 b.68.5.1 92032 3dasA 347 0.02049 1jofA 365 0.02239 b.69.10.1 71775 2qr5A 582 0.02445 b.69.7.2,c.69.1.33 151278,151279 3c5mA 396 0.02653 2hu5A 582 0.03368 b.69.7.2,c.69.1.33 136763,136764 1e8nA 710 0.05883 b.69.7.1,c.69.1.4 27675,34643 2vpjA 301 0.07019 2fluX 308 0.08319 b.68.11.1 133750 2ismA 352 0.09178 1o6gA 710 0.1018 b.69.7.1,c.69.1.4 81087,81088 3ii7A 306 0.1308 2iwaA 266 0.1533 2gopA 347 0.1566 2oizA 361 0.1679 1cruA 454 0.1777 b.68.2.1 27617 1x2jA 316 0.1962 b.68.11.1 121643 2zwaA 695 0.2324 1h2xA 710 0.2397 b.69.7.1,c.69.1.4 76598,76599 1xipA 388 0.2752 b.69.14.1 115360 2wozA 318 0.3230 2iwkA 642 0.3550 2iaaA 390 0.4328 2bklA 695 0.4462 1zgkA 308 0.4747 b.68.11.1 145998 2agyA 361 0.7370 3c75H 426 0.9144 1h2wA 710 1.011 b.69.7.1,c.69.1.4 76596,76597 3e0cA 1140 1.139 2fp8A 322 1.326 2vw2A 697 2.273 3b7fA 394 2.298 2b5nA 323 2.303 2g8sA 353 2.420 1bfgA 146 2.428 b.42.1.1 25485 2jkbA 686 2.589 2hyxA 352 3.417 3dzwA 109 3.602 1fwxA 595 3.889 b.6.1.4,b.69.3.1 60069,60070 2uvkA 357 5.396 2j04B 524 6.191 3hihA 223 6.780 1w2tA 432 7.790 b.29.1.19,b.67.2.3 120607,120608 1mt6A 280 8.510 b.76.2.1,b.85.7.1 79446,79447 2sliA 679 9.772 b.29.1.9,b.68.1.1 24274,27611 2dpfA 115 9.99 3gc3B 363 10.13 3ah2A 288 10.97 2w38A 438 11.49 2w5nA 367 11.69 2cn3A 737 13.44 1sqjA 789 13.56 b.69.13.1,b.69.13.1 105918,105919 1w8oA 601 14.33 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1uypA 432 15.27 b.29.1.19,b.67.2.3 100176,100177 1n1tA 641 16.35 b.29.1.15,b.68.1.1 79821,79822 2wftA 458 16.39 2rq9A 143 16.40 1utcA 363 16.90 a.118.1.4,b.69.6.1 99914,99915 1k3iA 656 17.27 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2vg9A 217 18.67 2eceA 462 21.86 2zuyA 620 22.11 2ww5A 468 22.67 1afcA 140 24.67 b.42.1.1 25506 3a0eA 110 25.75 3h6jA 438 25.88 3kf5A 512 28.19 1wcqA 601 28.63 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1s1dA 331 35.72 b.67.3.1 98344 2c1fA 234 37.12 1suuA 312 37.17 b.68.10.1 99006 2wg3C 463 37.26 2v05A 311 38.16 1ynaA 194 39.20 b.29.1.11 24335 3llpA 493 39.61 2pooA 355 39.70 b.68.3.1 27626 1barA 140 41.30 b.42.1.1 25504 3ei3A 1158 41.89 3hikA 237 42.22 1nkrA 201 45.25 b.1.1.4,b.1.1.4 21799,21800 1xnb 185 48.19 3fvhA 237 50.12 3c3vA 510 50.40 1jpcA 109 51.33 b.78.1.1 27986 1olzA 663 54.40 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1umwA 237 59.88 d.223.1.2,d.223.1.2 99631,99632 1d2gA 292 60.05 c.66.1.5 34187 2zuxA 591 61.78 1rg8A 146 62.74 b.42.1.1 111801 3kf3A 509 63.24 2ixsA 323 64.35 3k1uA 330 64.75 1h4gA 207 64.99 b.29.1.11 70863 2f7fA 494 65.72 c.1.17.1,d.41.2.1 133088,133089 3kstA 306 66.60 3fz3A 531 66.65 1ms9A 648 68.20 b.29.1.15,b.68.1.1 85088,85089 1m16A 146 68.77 b.42.1.1 91164 1jt7A 146 71.10 b.42.1.1 67255 2w20A 471 72.69 1h6lA 353 74.90 b.68.3.1 60687 2v2gA 233 75.84 3silA 379 78.29 b.68.1.1 27542 3kh7A 176 80.82 3l6vA 370 82.20 1k3xA 262 82.67 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2wg4B 457 83.11 2d5fA 493 84.97