# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a0rB 340 0.02394 b.69.4.1 27658 1gotB 340 0.02715 b.69.4.1 27648 2gnqA 336 0.02904 2bcjB 340 0.02915 b.69.4.1 128289 3emhA 318 0.03014 3frxA 319 0.03419 1gxrA 337 0.03444 b.69.4.1 70722 2h14A 317 0.03676 2pbiB 354 0.03834 1l0qA 391 0.06677 b.1.3.1,b.69.2.3 77644,77645 3elqA 571 0.07939 1r5mA 425 0.1041 3ei3B 383 0.1296 1nr0A 611 0.1548 b.69.4.1,b.69.4.1 86078,86079 1rwiA 270 0.1680 b.68.9.1 97987 2z2nA 299 0.1718 3hxjA 330 0.1731 2ovrB 445 0.1913 a.158.1.1,b.69.4.1 145735,145736 1q7fA 286 0.1977 b.68.9.1 96036 3dxkC 372 0.2018 3bwsA 433 0.2030 1nexB 464 0.2048 a.158.1.1,b.69.4.1 80443,80444 1pguA 615 0.2068 b.69.4.1,b.69.4.1 88069,88070 3fm0A 345 0.2103 3ei4B 436 0.2173 3greA 437 0.2274 3acpA 417 0.2358 1k8kC 372 0.2589 b.69.4.1 68308 1pbyB 337 0.2922 b.69.2.2 94422 3k26A 366 0.2974 2qxvA 361 0.3143 3fvzA 329 0.3396 2qc5A 300 0.3505 3iiwA 365 0.4105 2p4oA 306 0.4330 b.68.6.3 149216 2gc7A 386 0.4962 b.69.2.1 134954 2aq5A 402 0.4963 3g4eA 297 0.5215 1p22A 435 0.5671 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 0.5773 3dwlC 377 0.6552 2dg1A 333 0.6554 b.68.6.1 131493 3hfqA 347 0.6610 1s4uX 407 0.6847 b.69.4.1 112027 3hrpA 409 0.6882 1sq9A 397 0.6885 b.69.4.1 105889 2w18A 356 0.6886 3dw8B 447 0.7195 1ri6A 343 0.8031 b.69.11.1 97503 3cfsB 414 0.8187 1n6eA 1071 0.8403 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1u4cA 349 0.8816 b.69.4.2 107666 2hesX 330 0.8897 2oitA 434 1.009 1k32A 1045 1.026 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3fgbA 361 1.103 3e5zA 296 1.118 2iwaA 266 1.124 3c99A 432 1.135 2hqsA 415 1.177 b.68.4.1,c.51.2.1 136662,136663 1yfqA 342 1.235 b.69.4.2 116680 2ghsA 326 1.276 b.68.6.1 135209 1jmxB 349 1.323 b.69.2.2 66906 2oajA 902 1.379 3dsmA 328 1.476 3li3A 314 1.543 3i1cA 324 1.585 2qe8A 343 1.590 3gfcA 425 1.619 2ojhA 297 1.644 3li4A 314 1.682 3li5A 314 1.933 3c5mA 396 2.099 1w6sA 599 2.105 b.70.1.1 114284 2d5lA 706 2.231 2pm7B 297 2.256 1jofA 365 2.272 b.69.10.1 71775 3f3fA 351 2.323 2g8sA 353 2.467 1yiqA 689 2.525 3dr2A 305 2.541 1kb0A 677 2.560 a.3.1.6,b.70.1.1 68378,68379 1kv9A 668 2.663 a.3.1.6,b.70.1.1 73056,73057 1g72A 573 2.840 b.70.1.1 27680 2ismA 352 2.999 2ad6A 571 3.226 b.70.1.1 126568 2vduB 450 3.296 2p9wA 334 3.612 1lrwA 600 3.757 b.70.1.1 91111 3dasA 347 3.997 1npeA 267 4.201 b.68.5.1 92032 2z3zA 706 4.258 1v04A 355 4.302 b.68.6.2 100240 2oizA 361 4.501 2agyA 361 5.267 1o6gA 710 5.478 b.69.7.1,c.69.1.4 81087,81088 1pjxA 314 5.538 b.68.6.1 104167 3c75H 426 5.887 2iaaA 390 6.034 2iwkA 642 6.485 1h2xA 710 6.711 b.69.7.1,c.69.1.4 76598,76599 1h2wA 710 7.485 b.69.7.1,c.69.1.4 76596,76597 1orvA 728 7.643 b.70.3.1,c.69.1.24 87354,87355 2fp8A 322 8.199 3gc3B 363 8.258 1e8nA 710 8.993 b.69.7.1,c.69.1.4 27675,34643 3e0cA 1140 9.014 1yr2A 741 9.253 3hacA 728 9.287 2bklA 695 9.346 1xfdA 723 10.21 b.70.3.1,c.69.1.24 115251,115252 2wg3C 463 10.87 2zwaA 695 11.06 3g0bA 740 11.73 1mdaH 368 12.00 b.69.2.1 27637 2wozA 318 12.24 3kyaA 496 13.27 2fluX 308 14.06 b.68.11.1 133750 2eceA 462 16.03 2vpjA 301 16.83 1x2jA 316 17.59 b.68.11.1 121643 3b7fA 394 19.30 1utcA 363 21.66 a.118.1.4,b.69.6.1 99914,99915 1fwxA 595 21.92 b.6.1.4,b.69.3.1 60069,60070 1cruA 454 22.38 b.68.2.1 27617 1zgkA 308 24.50 b.68.11.1 145998 2wftA 458 25.78 2biwA 490 25.82 2wg4B 457 27.37 3ei3A 1158 31.56 3ii7A 306 32.60 2w5nA 367 32.82 2zuyA 620 34.57 1sqjA 789 34.60 b.69.13.1,b.69.13.1 105918,105919 3kvcA 533 37.17 2b5nA 323 39.28 1xipA 388 39.65 b.69.14.1 115360 2uvkA 357 41.21 3fsnA 533 42.00 2be1A 339 43.62 2cn3A 737 45.11 1s1dA 331 46.43 b.67.3.1 98344 1h6lA 353 52.24 b.68.3.1 60687 1k3iA 656 53.64 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2j04B 524 56.34 2b4wA 315 62.29 b.67.2.5 127866 2pooA 355 62.62 b.68.3.1 27626 2vw2A 697 73.14 1wp5A 323 74.05 b.68.10.1 114780 1w8oA 601 77.32 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3kstA 306 78.11 2hu5A 582 84.83 b.69.7.2,c.69.1.33 136763,136764 1usrA 454 85.86 b.68.1.1 99881 2gopA 347 86.18 1txvA 452 86.66 3kciA 389 89.26