# List of top-scoring protein chains for T0558.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g9aA 311 3.87e-15 2g99A 308 3.92e-15 2h6nA 312 4.27e-15 2o9kA 313 4.32e-15 2h14A 317 4.44e-15 2gnqA 336 4.54e-15 3emhA 318 4.56e-15 2h9lA 329 4.95e-15 2cnxA 315 5.06e-15 2co0A 315 6.55e-15 2zkqa 317 3.45e-12 1vyhC 410 6.81e-12 b.69.4.1 144534 1erjA 393 8.25e-12 b.69.4.1 27660 2bcjB 340 1.58e-11 b.69.4.1 128289 1tbgA 340 1.58e-11 b.69.4.1 27649 1a0rB 340 2.03e-11 b.69.4.1 27658 1gotB 340 2.04e-11 b.69.4.1 27648 3fm0A 345 7.93e-11 2pbiB 354 8.13e-11 1l0qA 391 2.78e-10 b.1.3.1,b.69.2.3 77644,77645 2ovrB 445 3.68e-10 a.158.1.1,b.69.4.1 145735,145736 3jyvR 313 6.24e-10 3frxA 319 7.17e-10 1trjA 314 9.04e-10 3dm0A 694 2.66e-09 1gxrA 337 2.89e-09 b.69.4.1 70722 1q7fA 286 8.10e-09 b.68.9.1 96036 1p22A 435 1.08e-08 a.158.1.1,b.69.4.1 87715,87716 3hxjA 330 1.56e-08 1nexB 464 2.15e-08 a.158.1.1,b.69.4.1 80443,80444 1nr0A 611 2.34e-08 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 3.71e-08 2hesX 330 1.20e-07 2aq5A 402 1.97e-07 3bg1A 316 4.08e-07 1k8kC 372 4.63e-07 b.69.4.1 68308 3dxkC 372 4.97e-07 2pm6B 297 5.49e-07 1r5mA 425 5.56e-07 3fvzA 329 5.95e-07 3jrpA 379 8.35e-07 2pm7B 297 9.57e-07 3c99A 432 1.18e-06 1rwiA 270 2.59e-06 b.68.9.1 97987 3gfcA 425 3.90e-06 3cfsB 414 4.50e-06 3bwsA 433 4.62e-06 3f3fA 351 4.87e-06 3eweA 349 4.89e-06 3ijcA 365 8.79e-06 2qxvA 361 9.47e-06 3iiwA 365 9.61e-06 3k26A 366 9.67e-06 2pm9A 416 1.15e-05 3jroA 753 1.48e-05 3ei3B 383 1.50e-05 3acpA 417 1.60e-05 3i2nA 357 1.80e-05 3jzhA 402 2.21e-05 2dsoA 333 2.82e-05 b.68.6.1 131689 1ri6A 343 2.94e-05 b.69.11.1 97503 2dg1A 333 4.07e-05 b.68.6.1 131493 1flgA 582 4.12e-05 b.70.1.1 27682 1kv9A 668 6.61e-05 a.3.1.6,b.70.1.1 73056,73057 1sq9A 397 7.49e-05 b.69.4.1 105889 1kb0A 677 7.77e-05 a.3.1.6,b.70.1.1 68378,68379 1s4uX 407 7.80e-05 b.69.4.1 112027 2iaxA 312 8.16e-05 2gvxA 314 8.22e-05 2ojhA 297 8.31e-05 2iapA 312 8.45e-05 2iavA 312 8.47e-05 1pjxA 314 8.68e-05 b.68.6.1 104167 2iaoA 312 8.95e-05 2iauA 312 9.01e-05 2gvuA 314 9.13e-05 3hlhA 314 9.94e-05 2iasA 312 0.000101 3hliA 314 0.000104 2iarA 312 0.000107 2iaqA 312 0.000107 2iatA 312 0.000112 2iawA 312 0.000114 3li5A 314 0.000118 3li3A 314 0.000118 3li4A 314 0.000121 3dwlC 377 0.000148 1pguA 615 0.000172 b.69.4.1,b.69.4.1 88069,88070 1yiqA 689 0.000180 3i1cA 324 0.000188 3g4eA 297 0.000421 2ivzA 439 0.000428 b.68.4.1,c.51.2.1 137729,137730 1crzA 403 0.000470 b.68.4.1,c.51.2.1 27629,33211 3iaxA 438 0.000502 2hqsA 415 0.000508 b.68.4.1,c.51.2.1 136662,136663 2w8bB 409 0.000531 2w8bA 409 0.000560 2i3sA 349 0.000831 b.69.4.2 137031 1u4cA 349 0.000860 b.69.4.2 107666 3fgbA 361 0.000867 1yfqA 342 0.000871 b.69.4.2 116680 2i3tA 341 0.000876 b.69.4.2 137034 3hfqA 347 0.001183 1pbyB 337 0.001320 b.69.2.2 94422 2z2nA 299 0.001469 1jmxB 349 0.001478 b.69.2.2 66906 2z2pA 299 0.001568 2qc5A 300 0.002048 3dw8B 447 0.002832 3hrpA 409 0.004983 3e5zA 296 0.006833 3greA 437 0.006905 3dsmA 328 0.007403 3dasA 347 0.008347 2ghsA 326 0.009403 b.68.6.1 135209 3dr2A 305 0.01069 2ismA 352 0.01423 2ad6A 571 0.01538 b.70.1.1 126568 1g72A 573 0.01557 b.70.1.1 27680 1npeA 267 0.01916 b.68.5.1 92032 1cruA 454 0.02105 b.68.2.1 27617 1jofA 365 0.02335 b.69.10.1 71775 3fhcA 405 0.02476 2p4oA 306 0.02877 b.68.6.3 149216 2vduB 450 0.03147 2hz6A 369 0.03164 2oitA 434 0.04582 3fmoA 450 0.04666 2bbkH 355 0.05836 b.69.2.1 27634 1mg2A 390 0.06716 b.69.2.1 79059 2iaaA 390 0.07017 2q7qA 361 0.07496 2hkrA 362 0.07601 2oizA 361 0.07688 2i0rA 361 0.07765 2i0sA 360 0.07836 2dcmA 706 0.07837 2d5lA 706 0.08043 2gc7A 386 0.08494 b.69.2.1 134954 2z3zA 706 0.08549 2mtaH 373 0.09948 b.69.2.1 27636 1zgkA 308 0.1005 b.68.11.1 145998 1h4jA 599 0.1041 b.70.1.1 60590 2fluX 308 0.1055 b.68.11.1 133750 1h4iA 599 0.1078 b.70.1.1 60586 1w6sA 599 0.1091 b.70.1.1 114284 1x2jA 316 0.1179 b.68.11.1 121643 2dyhA 318 0.1182 b.68.11.1 146612 1lrwA 600 0.1196 b.70.1.1 91111 1k32A 1045 0.1346 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2oajA 902 0.1528 1ijqA 316 0.1632 b.68.5.1,g.3.11.1 62506,62507 1v04A 355 0.1678 b.68.6.2 100240 1n6eA 1071 0.2104 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2vpjA 301 0.2283 3c75H 426 0.2470 2iwaA 266 0.3021 2d0vA 597 0.3709 2qe8A 343 0.3799 2w18A 356 0.4489 2v91A 302 0.4632 2fp8A 322 0.6144 2eceA 462 0.7226 1qksA 567 0.7772 a.3.1.2,b.70.2.1 15951,27710 2fpbA 322 0.7995 1e2rA 567 0.8104 a.3.1.2,b.70.2.1 15953,27712 1gq1A 567 0.9160 a.3.1.2,b.70.2.1 76264,76265 1hj5A 567 0.9312 a.3.1.2,b.70.2.1 15927,27684 2uvkA 357 1.422 2gopA 347 1.557 3bz5A 457 1.571 1n7dA 699 1.841 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 2p9wA 334 1.860 1z68A 719 2.058 2be1A 339 3.193 1c9lA 357 3.954 a.118.1.4,b.69.6.1 19139,27666 2wozA 318 3.984 3c5mA 396 3.997 1c9iA 359 4.026 a.118.1.4,b.69.6.1 19141,27668 1qniA 581 4.030 b.6.1.4,b.69.3.1 23042,27642 2ecfA 741 4.031 3gc3B 363 4.246 2qjrA 748 4.469 b.70.3.1,c.69.1.24 150830,150831 1wcyA 740 4.813 b.70.3.1,c.69.1.24 120903,120904 2jidA 736 5.039 b.70.3.1,c.69.1.24 148087,148088 3kyaA 496 5.044 2rguA 734 5.076 b.70.3.1,c.69.1.24 152022,152023 2bgrA 738 5.084 b.70.3.1,c.69.1.24 128496,128497 1pfqA 731 5.153 b.70.3.1,c.69.1.24 88061,88062 2oncA 731 5.183 b.70.3.1,c.69.1.24 148891,148892 1r9mA 733 5.266 b.70.3.1,c.69.1.24 104870,104871 2ripA 729 5.272 b.70.3.1,c.69.1.24 152095,152096 1u8eA 728 5.316 b.70.3.1,c.69.1.24 107733,107734 1tk3A 728 5.332 b.70.3.1,c.69.1.24 107069,107070 3hacA 728 5.350 3g0bA 740 5.408 2g63A 726 5.417 b.70.3.1,c.69.1.24 134686,134687 1r9nA 739 5.448 b.70.3.1,c.69.1.24 118745,118746 2qt9A 766 5.586 b.70.3.1,c.69.1.24 151329,151330 2pooA 355 6.827 b.68.3.1 27626 3b7fA 394 6.833 1h6lA 353 7.096 b.68.3.1 60687 2j04B 524 7.266 3hx6A 570 7.321 2g8sA 353 7.448 1nirA 543 7.581 a.3.1.2,b.70.2.1 15939,27698 1qlgA 355 7.964 b.68.3.1 27627 1hzvA 543 8.369 a.3.1.2,b.70.2.1 61462,61463 3kciA 389 8.533 3ez1A 423 8.583 2iwgB 181 9.758 b.29.1.22 145548 3kb5A 193 10.22 1hzuA 543 10.49 a.3.1.2,b.70.2.1 61460,61461 2zuxA 591 13.87 2cn3A 737 14.33 1yr2A 741 15.97 1bpoA 494 18.19 a.118.1.4,b.69.6.1 19143,27670 2wg4B 457 19.51 2wftA 458 19.70 2wg3C 463 19.81 1fwxA 595 22.26 b.6.1.4,b.69.3.1 60069,60070 3ho3A 481 22.71 2cn2A 737 24.45 1tl2A 236 27.62 b.67.1.1 27541 1t2xA 639 30.28 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 2qzpA 562 33.93 b.69.7.2,c.69.1.33 151487,151488 2iwkA 642 36.81 1suuA 312 37.16 b.68.10.1 99006 3elqA 571 38.04 3e0cA 1140 39.25 2eidA 639 39.52 b.1.18.2,b.18.1.1,b.69.1.1 132133,132134,132135 3dduA 709 40.65 2j04A 588 41.74 1pigA 496 43.52 b.71.1.1,c.1.8.1 27764,28751 2eibA 639 43.72 b.1.18.2,b.18.1.1,b.69.1.1 132127,132128,132129 3ei3A 1158 43.91 3icoA 268 44.96 2eicA 639 45.80 b.1.18.2,b.18.1.1,b.69.1.1 132130,132131,132132 1vrmA 325 46.87 d.96.2.1 120472 1oqlB 263 47.17 b.42.2.1,b.42.2.1 87307,87308 3kifA 106 47.89 2hu8A 582 48.33 b.69.7.2,c.69.1.33 136772,136773 2qr5A 582 48.82 b.69.7.2,c.69.1.33 151278,151279 2hu5A 582 48.91 b.69.7.2,c.69.1.33 136763,136764 1gofA 639 49.12 b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 3ii7A 306 49.39 3c7fA 487 50.79 3c7gA 488 50.79 3dzwA 109 51.09 1kxqA 496 51.95 b.71.1.1,c.1.8.1 73163,73164 3ettA 571 52.21 1hx0A 496 52.27 b.71.1.1,c.1.8.1 61346,61347 2we8A 386 52.68 1e5tA 710 52.74 b.69.7.1,c.69.1.4 27676,34644 1vz2A 710 53.45 b.69.7.1,c.69.1.4 108945,108946 2gbcA 730 53.48 3l2mA 496 55.54 1h2xA 710 55.82 b.69.7.1,c.69.1.4 76598,76599 1h2wA 710 55.99 b.69.7.1,c.69.1.4 76596,76597 1wp5A 323 56.11 b.68.10.1 114780 2zuyA 620 56.39 1o6gA 710 56.86 b.69.7.1,c.69.1.4 81087,81088 1i2mB 402 57.17 b.69.5.1 61569 1e8nA 710 57.24 b.69.7.1,c.69.1.4 27675,34643 1a12A 413 58.20 b.69.5.1 27663 2b5lA 1140 58.37 1vz3A 710 58.50 b.69.7.1,c.69.1.4 108947,108948 3i7kA 1143 59.22 1o6fA 710 59.40 b.69.7.1,c.69.1.4 81085,81086 2ftwA 521 59.76 b.92.1.3,c.1.9.6 134083,134084 1oseA 496 60.10 b.71.1.1,c.1.8.1 27766,28753 1dhkA 496 61.34 b.71.1.1,c.1.8.1 27761,28748 1vahA 496 61.93 b.71.1.1,c.1.8.1 119905,119906 2v7wA 299 62.02 b.141.1.1,c.132.1.1 152755,152756 1bvnP 496 62.16 b.71.1.1,c.1.8.1 27767,28754 3c12A 138 63.00 1ppiA 496 63.38 b.71.1.1,c.1.8.1 27763,28750 1rqpA 299 63.77 b.141.1.1,c.132.1.1 97754,97755 2v7xA 299 64.27 b.141.1.1,c.132.1.1 152761,152762 1o6wA 75 64.28 b.72.1.1,b.72.1.1 81103,81104 1eqwA 156 65.12 b.1.8.1 22294 1jfhA 496 65.27 b.71.1.1,c.1.8.1 27762,28749 3ei4A 1158 65.46 2wwlB 218 65.88 2gy9B 236 66.88 c.23.15.1 145232 2qalB 240 70.26 c.23.15.1 150213 3i1mB 241 71.39 1kmzA 130 72.56 d.32.1.2 72759 2dkjA 407 77.60 1mdaL 121 77.78 g.21.1.1 44885 2ez5W 46 78.83 1onkB 263 79.67 b.42.2.1,b.42.2.1 93360,93361 2a4xA 138 79.85 d.32.1.2 126166 2uyoA 310 82.31 c.66.1.57 152321 2zwaA 695 82.54 1mkeA 152 82.92 b.55.1.4 79231 3lwxA 199 88.99 2biwA 490 89.45