# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gotB 340 6.43e-18 b.69.4.1 27648 2pbiB 354 6.86e-18 3emhA 318 7.20e-18 2h14A 317 8.54e-18 2gnqA 336 1.04e-17 1a0rB 340 1.31e-17 b.69.4.1 27658 2bcjB 340 1.40e-17 b.69.4.1 128289 1gxrA 337 3.58e-17 b.69.4.1 70722 1r5mA 425 1.11e-16 3fm0A 345 1.24e-16 1nr0A 611 1.27e-16 b.69.4.1,b.69.4.1 86078,86079 2qc5A 300 1.40e-16 3frxA 319 2.17e-16 2z2nA 299 3.48e-16 3acpA 417 5.38e-16 3fvzA 329 5.60e-16 1k8kC 372 6.08e-16 b.69.4.1 68308 1rwiA 270 6.52e-16 b.68.9.1 97987 3ei4B 436 6.60e-16 2qxvA 361 1.31e-15 3dxkC 372 1.31e-15 1pguA 615 1.61e-15 b.69.4.1,b.69.4.1 88069,88070 1ri6A 343 2.78e-15 b.69.11.1 97503 1l0qA 391 2.97e-15 b.1.3.1,b.69.2.3 77644,77645 2aq5A 402 3.14e-15 1nexB 464 3.66e-15 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 3.75e-15 3dwlC 377 4.19e-15 3k26A 366 4.66e-15 2oajA 902 5.23e-15 3i2nA 357 5.32e-15 3hrpA 409 5.42e-15 2dg1A 333 5.83e-15 b.68.6.1 131493 1q7fA 286 6.39e-15 b.68.9.1 96036 3bwsA 433 7.79e-15 2ovrB 445 8.41e-15 a.158.1.1,b.69.4.1 145735,145736 3greA 437 9.24e-15 3hfqA 347 1.10e-14 2pm7B 297 1.36e-14 3iiwA 365 1.44e-14 3dw8B 447 1.64e-14 3dsmA 328 1.68e-14 2hesX 330 1.71e-14 1yfqA 342 2.08e-14 b.69.4.2 116680 1p22A 435 2.29e-14 a.158.1.1,b.69.4.1 87715,87716 2oizA 361 2.29e-14 3c99A 432 2.31e-14 1kb0A 677 2.31e-14 a.3.1.6,b.70.1.1 68378,68379 2p4oA 306 2.54e-14 b.68.6.3 149216 3cfsB 414 3.25e-14 2gc7A 386 3.66e-14 b.69.2.1 134954 2qe8A 343 4.18e-14 1pbyB 337 4.92e-14 b.69.2.2 94422 3e5zA 296 5.52e-14 3c75H 426 5.55e-14 3hxjA 330 6.88e-14 3li3A 314 7.20e-14 3gfcA 425 7.22e-14 2agyA 361 7.73e-14 1pjxA 314 9.87e-14 b.68.6.1 104167 3f3fA 351 1.04e-13 2ojhA 297 1.11e-13 3li5A 314 1.21e-13 1s4uX 407 1.31e-13 b.69.4.1 112027 1jmxB 349 1.36e-13 b.69.2.2 66906 2ad6A 571 1.39e-13 b.70.1.1 126568 2vduB 450 1.57e-13 2oitA 434 1.85e-13 1sq9A 397 1.92e-13 b.69.4.1 105889 2hqsA 415 2.30e-13 b.68.4.1,c.51.2.1 136662,136663 2ghsA 326 2.46e-13 b.68.6.1 135209 3i1cA 324 2.83e-13 3li4A 314 3.16e-13 3dr2A 305 3.46e-13 2iaaA 390 3.64e-13 2w18A 356 5.64e-13 3fgbA 361 6.70e-13 1yiqA 689 6.86e-13 1w6sA 599 9.26e-13 b.70.1.1 114284 2fp8A 322 9.66e-13 1k32A 1045 1.04e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2j04B 524 1.22e-12 1kv9A 668 1.25e-12 a.3.1.6,b.70.1.1 73056,73057 2d5lA 706 2.37e-12 3kyaA 496 2.69e-12 3c5mA 396 3.03e-12 3ei3A 1158 4.47e-12 1jofA 365 5.87e-12 b.69.10.1 71775 1xipA 388 7.88e-12 b.69.14.1 115360 3g4eA 297 7.96e-12 1npeA 267 1.03e-11 b.68.5.1 92032 3e0cA 1140 1.04e-11 2be1A 339 1.26e-11 1v04A 355 1.63e-11 b.68.6.2 100240 1orvA 728 2.12e-11 b.70.3.1,c.69.1.24 87354,87355 2hu5A 582 2.13e-11 b.69.7.2,c.69.1.33 136763,136764 1cruA 454 9.53e-11 b.68.2.1 27617 2z3zA 706 1.14e-10 3hacA 728 1.15e-10 2gopA 347 1.43e-10 1yr2A 741 1.82e-10 1h2wA 710 1.93e-10 b.69.7.1,c.69.1.4 76596,76597 2wftA 458 3.34e-10 3g0bA 740 4.22e-10 2qr5A 582 5.35e-10 b.69.7.2,c.69.1.33 151278,151279 1k3iA 656 5.79e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3llpA 493 1.02e-09 1o6gA 710 2.70e-09 b.69.7.1,c.69.1.4 81087,81088 2bklA 695 3.33e-09 3dasA 347 5.54e-09 2g8sA 353 1.91e-07 2ismA 352 2.15e-07 3elqA 571 5.07e-07 2iwaA 266 6.03e-07 2p9wA 334 1.01e-06 1zgkA 308 2.08e-06 b.68.11.1 145998 2wg4B 457 2.92e-06 2vpjA 301 4.88e-06 3ii7A 306 7.23e-06 2fluX 308 7.47e-06 b.68.11.1 133750 2wg3C 463 7.52e-06 1x2jA 316 7.74e-06 b.68.11.1 121643 2uvkA 357 2.47e-05 2wozA 318 2.50e-05 2eceA 462 5.74e-05 1mdaH 368 5.88e-05 b.69.2.1 27637 2zwaA 695 9.30e-05 3hx6A 570 0.000179 1h6lA 353 0.000220 b.68.3.1 60687 3gc3B 363 0.000830 3h6jA 438 0.001641 2ebsA 789 0.002159 b.69.13.1,b.69.13.1 146772,146773 2zuxA 591 0.003155 3hxrA 761 0.003216 2b5nA 323 0.005344 1sqjA 789 0.005490 b.69.13.1,b.69.13.1 105918,105919 3b7fA 394 0.01009 1utcA 363 0.01289 a.118.1.4,b.69.6.1 99914,99915 3h7nA 729 0.01351 2zuyA 620 0.01662 3f6kA 685 0.01765 3kciA 389 0.03467 2v05A 311 0.04852 2iwkA 642 0.07658 1fwxA 595 0.07679 b.6.1.4,b.69.3.1 60069,60070 3l2oB 312 0.08011 2cn3A 737 0.08026 2jkbA 686 0.1040 2w5nA 367 0.1105 2sliA 679 0.1349 b.29.1.9,b.68.1.1 24274,27611 2w20A 471 0.1379 1zi0A 307 0.1581 3f7fA 729 0.1700 1q47A 495 0.1736 b.69.12.1 104532 1shyB 551 0.1977 b.69.12.1,g.16.2.1 105565,105566 1ofzA 312 0.2163 b.68.8.1 86978 1suuA 312 0.2553 b.68.10.1 99006 2jd4A 383 0.3618 2vw2A 697 0.3732 2ww5A 468 0.4203 1wl7A 312 0.4684 b.67.2.1 120996 2bibA 547 0.5487 b.109.1.1,d.157.1.8 128581,128582 3kvcA 533 0.5702 3d61A 314 0.7877 3fsnA 533 0.8083 3cu9A 314 0.8600 2j04A 588 0.9923 1so7A 382 1.094 b.68.1.1 112106 1wp5A 323 1.127 b.68.10.1 114780 3d60A 314 1.391 3silA 379 1.402 b.68.1.1 27542 3kstA 306 1.912 2uzxB 727 1.942 3d5yA 314 2.235 1yrzA 528 2.242 b.29.1.23,b.67.2.1 123948,123949 3l6vA 370 2.289 2w38A 438 2.574 1gyhA 318 2.934 b.67.2.1 70757 1zvtA 256 3.328 1olzA 663 3.333 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3c12A 138 3.507 3lv4A 456 3.763 3c2uA 538 3.809 2f6eA 127 4.162 3kptA 355 4.239 1pz7A 204 4.371 b.29.1.4 95405 3c3vA 510 4.819 2ww8A 893 4.924 2wl1A 191 5.850 2bf6A 449 5.864 3cjyA 259 5.980 2biwA 490 6.009 2ac1A 541 6.276 2hboA 158 6.425 d.38.1.5 136319 1uv4A 293 7.107 b.67.2.1 119705 2z8rA 591 7.425 1w8oA 601 7.645 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2wjsA 608 8.588 2ej8A 160 8.676 3fz3A 531 8.972 1vkdA 338 9.618 b.67.2.4 108644 2cohA 202 9.807 a.4.5.4,b.82.3.2 130677,130678 1h09A 338 10.23 b.109.1.1,c.1.8.8 83420,83421 1jtdB 273 10.45 b.69.5.2 67265 1iwlA 182 10.79 b.125.1.1 83757 1xd5A 112 12.53 b.78.1.1 115155 2zcwA 202 12.73 1s1dA 331 12.87 b.67.3.1 98344 2iwgB 181 13.04 b.29.1.22 145548 1ksiA 642 13.22 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2o62A 270 14.17 b.60.1.9,b.60.1.9 148622,148623 3flpA 217 14.49 1at0A 145 14.61 b.86.1.1 28374 2b20A 403 14.69 b.1.18.20,c.69.1.2 127685,127686 2aukA 190 14.69 3cpnA 330 15.41 1qu0A 191 16.47 b.29.1.4 24225 1c3mA 147 16.66 b.77.3.1 27983 3c7fA 487 17.14 1kj1D 109 17.20 b.78.1.1 68639 1xksA 450 17.40 b.69.14.1 115422 3hlkA 446 19.49 1w0pA 781 20.69 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3a0eA 110 20.71 3bk5A 237 23.17 2e11A 266 23.23 2gu1A 361 23.59 3kb5A 193 23.76 3d3iA 761 24.69 3k2iA 422 24.74 3gf8A 296 25.31 3db5A 151 25.76 2w1vA 276 27.03 2j8gA 339 28.07 b.109.1.1,c.1.8.8 147915,147916 2jxwA 75 28.07 1y7bA 542 28.52 b.29.1.23,b.67.2.1 122687,122688 1h30A 422 29.40 b.29.1.4,b.29.1.4 76604,76605 3fx3A 237 30.19 1ntvA 152 30.35 b.55.1.2 86168 3flcO 518 31.94 3h3zA 235 32.10 2pz4A 239 32.60 1jpcA 109 34.60 b.78.1.1 27986 1f89A 291 35.60 d.160.1.1 64988 3fzyA 234 35.71 2elaA 175 35.97 3hkxA 283 37.26 2zpdA 190 37.36 1nnxA 109 37.41 b.40.10.1 92013 3k1uA 330 37.71 3bodA 178 39.33 3dzwA 109 40.42 3gbtA 504 42.39 2fy6A 143 42.66 c.47.1.10 134344 2w40A 503 42.97 2h6cA 232 43.72 a.4.5.4,b.82.3.2 147232,147233 3bbjA 272 44.23 3c9zA 258 44.31 3ibzA 191 44.40 2bgzA 299 44.62 3d7eO 505 44.67 3l5eA 414 44.91 3e5xA 250 45.03 3e6cC 250 45.34 a.4.5.4,b.82.3.2 158038,158039 2burA 209 45.68 b.3.6.1 129227 3ezwA 526 46.70 3malA 199 46.98 2yzyA 200 47.68 3l0qA 554 48.54 1s7jA 262 48.84 d.21.1.2 98647 3ewkA 227 48.91 2cy9A 140 49.05 d.38.1.5 131019 2kppA 114 49.60 3kcmA 154 50.16 2f0xA 148 51.21 d.38.1.5 132673 1y7mA 164 52.28 b.160.1.1,d.7.1.1 122696,122697 2d5fA 493 52.37 3ll3A 504 52.50 2zf5O 497 52.83 1wuuA 399 53.08 d.14.1.5,d.58.26.7 114900,114901 3e97A 231 53.25 3fijA 254 53.52 3fosA 214 53.57 2bc4A 211 53.58 3ld7A 101 53.73 2h0bA 184 54.38 2hfsA 332 55.03 2icjA 233 55.53 1vqoA 240 55.54 b.34.5.3,b.40.4.5 120361,120362 3equA 542 56.27 2vouA 397 56.40 c.3.1.2,d.16.1.2 153389,153390 2d4wA 504 56.44 3dv8A 220 57.31 2q4nA 166 57.68 b.60.1.8 139871 2e9qA 459 57.96 3a1jC 263 58.65 3b3qE 197 59.09 b.29.1.4 154813 2cy5A 140 60.42 b.55.1.2 131018 3d0sA 227 60.74 3h46O 506 61.05 1juhA 350 61.60 b.82.1.5 71884 2i7fA 108 62.02 2ayhA 214 63.03 b.29.1.2 24172 3h3nO 506 63.31 1jcfA 344 64.40 c.55.1.1,c.55.1.1 62878,62879 2yzqA 282 65.63 d.37.1.1,d.37.1.1 153904,153905 1wluA 136 66.10 d.38.1.5 121015 2ifsA 169 66.83 2yzhA 171 67.83 3hz6A 511 69.63 1j1yA 136 70.91 d.38.1.5 90776 2w95A 254 71.39 1xzoA 174 71.74 c.47.1.10 122474 1zkiA 133 72.31 d.38.1.5 125199 3gkeA 349 72.68 1jfuA 186 72.84 c.47.1.10 62940 1oygA 447 73.30 b.67.2.2 93726 2r16A 182 74.10 3ge2A 130 74.81 1yi9A 309 74.88 b.121.1.2,b.121.1.2 123276,123277 3eurA 142 75.04 1a9xB 379 75.50 c.8.3.1,c.23.16.1 30732,31409 3bm4A 210 76.90 2dpfA 115 77.77 1zatA 250 78.47 b.160.1.1,d.335.1.1 124845,124846 1wlgA 299 78.80 b.152.1.1 114726 3buuA 229 78.81 2in0A 139 80.43 3k85A 357 80.61 1hw5A 210 81.89 a.4.5.4,b.82.3.2 16098,28137 1yifA 533 81.99 b.29.1.23,b.67.2.1 123283,123284 2cl2A 298 82.63 2fsjA 346 83.66 c.55.1.12,c.55.1.12 134025,134026 1k9vF 201 83.83 c.23.16.1 68365 1mixA 206 84.63 a.11.2.1,b.55.1.5 79166,79167 1o6wA 75 85.43 b.72.1.1,b.72.1.1 81103,81104 1s14A 194 85.79 d.122.1.2 98329 1ajoA 214 85.98 b.29.1.2 24179 3hd8A 389 85.99 2fs2A 151 86.21 d.38.1.5 134003 3gg4A 554 86.50 1sh8A 154 87.61 d.38.1.5 105549 2uxtA 451 88.17 1aqcA 172 88.25 b.55.1.2 26983 1p4kA 295 89.40 d.153.1.5 87772