# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h14A 317 4.70e-14 3emhA 318 5.26e-14 2gnqA 336 5.47e-14 1gotB 340 5.96e-14 b.69.4.1 27648 2pbiB 354 7.12e-14 2bcjB 340 9.47e-14 b.69.4.1 128289 2qc5A 300 1.08e-13 1a0rB 340 1.40e-13 b.69.4.1 27658 2z2nA 299 1.55e-13 1nr0A 611 2.03e-13 b.69.4.1,b.69.4.1 86078,86079 1gxrA 337 2.94e-13 b.69.4.1 70722 3frxA 319 6.24e-13 1r5mA 425 6.34e-13 3fm0A 345 1.10e-12 3fvzA 329 1.18e-12 1l0qA 391 1.52e-12 b.1.3.1,b.69.2.3 77644,77645 1rwiA 270 1.60e-12 b.68.9.1 97987 1q7fA 286 2.20e-12 b.68.9.1 96036 1k8kC 372 3.10e-12 b.69.4.1 68308 3acpA 417 3.83e-12 1pguA 615 5.05e-12 b.69.4.1,b.69.4.1 88069,88070 3dxkC 372 5.06e-12 1ri6A 343 5.41e-12 b.69.11.1 97503 3hxjA 330 6.10e-12 2dg1A 333 6.75e-12 b.68.6.1 131493 3ei4B 436 7.29e-12 3bwsA 433 7.46e-12 2qxvA 361 9.32e-12 3hrpA 409 1.09e-11 1nexB 464 1.16e-11 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 1.47e-11 3k26A 366 1.54e-11 3dwlC 377 1.55e-11 3hfqA 347 1.57e-11 3dsmA 328 1.61e-11 3li3A 314 1.85e-11 2oajA 902 2.01e-11 2ovrB 445 2.37e-11 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 2.38e-11 2p4oA 306 2.49e-11 b.68.6.3 149216 2aq5A 402 2.50e-11 1pbyB 337 2.79e-11 b.69.2.2 94422 1kb0A 677 3.12e-11 a.3.1.6,b.70.1.1 68378,68379 3greA 437 3.23e-11 3i2nA 357 3.24e-11 3dw8B 447 3.36e-11 2oizA 361 3.45e-11 2gc7A 386 4.43e-11 b.69.2.1 134954 2pm7B 297 4.50e-11 3li5A 314 4.76e-11 1pjxA 314 4.88e-11 b.68.6.1 104167 3e5zA 296 5.15e-11 3i1cA 324 5.45e-11 3cfsB 414 6.90e-11 2hesX 330 7.85e-11 3c75H 426 8.09e-11 3c99A 432 8.12e-11 1p22A 435 8.42e-11 a.158.1.1,b.69.4.1 87715,87716 2qe8A 343 8.53e-11 2ghsA 326 8.98e-11 b.68.6.1 135209 3li4A 314 9.32e-11 1yfqA 342 1.08e-10 b.69.4.2 116680 2agyA 361 1.14e-10 3gfcA 425 1.15e-10 2ad6A 571 1.24e-10 b.70.1.1 126568 2ojhA 297 1.53e-10 3dr2A 305 1.65e-10 1jmxB 349 1.69e-10 b.69.2.2 66906 3fgbA 361 2.37e-10 2iaaA 390 2.42e-10 3f3fA 351 2.92e-10 2vduB 450 3.32e-10 2oitA 434 3.36e-10 1s4uX 407 3.65e-10 b.69.4.1 112027 1sq9A 397 4.65e-10 b.69.4.1 105889 2hqsA 415 5.22e-10 b.68.4.1,c.51.2.1 136662,136663 2fp8A 322 5.60e-10 2w18A 356 6.53e-10 1w6sA 599 8.10e-10 b.70.1.1 114284 1kv9A 668 9.26e-10 a.3.1.6,b.70.1.1 73056,73057 1yiqA 689 1.08e-09 3g4eA 297 1.20e-09 1jofA 365 1.21e-09 b.69.10.1 71775 3kyaA 496 1.49e-09 3c5mA 396 1.51e-09 2j04B 524 1.85e-09 1npeA 267 2.22e-09 b.68.5.1 92032 1k32A 1045 2.36e-09 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d5lA 706 3.20e-09 2be1A 339 3.92e-09 1v04A 355 6.40e-09 b.68.6.2 100240 2hu5A 582 9.26e-09 b.69.7.2,c.69.1.33 136763,136764 1xipA 388 1.40e-08 b.69.14.1 115360 3ei3A 1158 1.75e-08 3e0cA 1140 1.83e-08 2gopA 347 2.42e-08 1orvA 728 2.64e-08 b.70.3.1,c.69.1.24 87354,87355 1cruA 454 5.46e-08 b.68.2.1 27617 2z3zA 706 8.89e-08 2wftA 458 9.26e-08 1h2wA 710 1.04e-07 b.69.7.1,c.69.1.4 76596,76597 3hacA 728 1.16e-07 1yr2A 741 1.46e-07 3llpA 493 1.58e-07 1k3iA 656 1.58e-07 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 1.68e-07 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 5.00e-07 3dasA 347 8.19e-07 2bklA 695 8.93e-07 1o6gA 710 1.81e-06 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 1.08e-05 2iwaA 266 1.44e-05 2g8sA 353 2.11e-05 3elqA 571 3.26e-05 1zgkA 308 3.70e-05 b.68.11.1 145998 2p9wA 334 4.05e-05 2wg4B 457 7.73e-05 1x2jA 316 7.85e-05 b.68.11.1 121643 2vpjA 301 8.68e-05 2fluX 308 9.26e-05 b.68.11.1 133750 3ii7A 306 0.000152 2wg3C 463 0.000350 1mdaH 368 0.000712 b.69.2.1 27637 2eceA 462 0.001260 2uvkA 357 0.001322 2wozA 318 0.001619 1h6lA 353 0.004006 b.68.3.1 60687 2zuxA 591 0.005684 3hx6A 570 0.007598 3gc3B 363 0.01410 2ebsA 789 0.02218 b.69.13.1,b.69.13.1 146772,146773 2zwaA 695 0.02456 1sqjA 789 0.02491 b.69.13.1,b.69.13.1 105918,105919 2zuyA 620 0.02728 2b5nA 323 0.03094 1utcA 363 0.07048 a.118.1.4,b.69.6.1 99914,99915 3b7fA 394 0.07095 2cn3A 737 0.08273 2v05A 311 0.09146 3hxrA 761 0.09275 1fwxA 595 0.1354 b.6.1.4,b.69.3.1 60069,60070 3h6jA 438 0.1378 2w20A 471 0.1581 3f6kA 685 0.1837 2iwkA 642 0.2554 2bibA 547 0.2805 b.109.1.1,d.157.1.8 128581,128582 2jd4A 383 0.3504 2sliA 679 0.3966 b.29.1.9,b.68.1.1 24274,27611 3h7nA 729 0.4158 1ofzA 312 0.4495 b.68.8.1 86978 1zi0A 307 0.5544 2bwrA 401 0.5694 2jkbA 686 0.6718 1suuA 312 0.6922 b.68.10.1 99006 1q47A 495 0.9624 b.69.12.1 104532 2ww5A 468 1.027 2w5nA 367 1.065 3l2oB 312 1.088 3kciA 389 1.459 3kvcA 533 1.659 3silA 379 1.795 b.68.1.1 27542 2vw2A 697 1.815 3f7fA 729 2.009 1wp5A 323 2.597 b.68.10.1 114780 3a0eA 110 3.010 3l6vA 370 3.719 1shyB 551 3.859 b.69.12.1,g.16.2.1 105565,105566 2ac1A 541 3.930 1w8oA 601 4.013 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1pz7A 204 4.224 b.29.1.4 95405 2z8rA 591 4.363 2bf6A 449 4.700 2f6eA 127 4.796 3fsnA 533 5.059 1jtdB 273 5.247 b.69.5.2 67265 2w38A 438 5.604 1olzA 663 5.830 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3c12A 138 5.837 1kj1D 109 6.244 b.78.1.1 68639 2j8gA 339 6.373 b.109.1.1,c.1.8.8 147915,147916 3cu9A 314 6.431 3c2uA 538 6.457 1qu0A 191 6.542 b.29.1.4 24225 1uypA 432 6.597 b.29.1.19,b.67.2.3 100176,100177 3kstA 306 6.772 2r16A 182 6.827 1wl7A 312 7.105 b.67.2.1 120996 1h09A 338 7.127 b.109.1.1,c.1.8.8 83420,83421 1zvtA 256 7.367 1yrzA 528 7.569 b.29.1.23,b.67.2.1 123948,123949 3kptA 355 8.084 3d61A 314 8.324 2wl1A 191 9.053 1xd5A 112 9.239 b.78.1.1 115155 1so7A 382 9.391 b.68.1.1 112106 1jpcA 109 9.96 b.78.1.1 27986 2j04A 588 10.32 3d5yA 314 10.41 2ww8A 893 11.78 3dzwA 109 11.79 2h0bA 184 12.14 2wjsA 608 12.26 2bgzA 299 12.61 1wlgA 299 12.99 b.152.1.1 114726 1xksA 450 13.27 b.69.14.1 115422 2aukA 190 13.37 3lv4A 456 13.38 2dpfA 115 13.47 1w2tA 432 13.67 b.29.1.19,b.67.2.3 120607,120608 2uzxB 727 14.18 3c3vA 510 14.44 3d60A 314 14.89 3fz3A 531 15.57 2o62A 270 16.17 b.60.1.9,b.60.1.9 148622,148623 1qxmA 300 16.30 b.42.2.1,b.42.2.1 96533,96534 2i7fA 108 17.33 3ah2A 288 19.74 2uxtA 451 19.94 2gu1A 361 20.13 3bodA 178 20.35 3cpnA 330 20.35 1h30A 422 20.48 b.29.1.4,b.29.1.4 76604,76605 1c3mA 147 21.69 b.77.3.1 27983 3c7fA 487 21.94 1at0A 145 22.00 b.86.1.1 28374 1gyhA 318 22.14 b.67.2.1 70757 2vdrA 452 22.74 3c9zA 258 23.74 3fosA 214 23.86 2ayhA 214 24.17 b.29.1.2 24172 1gqzA 274 26.12 d.21.1.1,d.21.1.1 83311,83312 3kb5A 193 27.97 2ej8A 160 28.04 1uv4A 293 28.15 b.67.2.1 119705 2pz4A 239 28.23 1vkdA 338 28.60 b.67.2.4 108644 2jxwA 75 29.06 3flpA 217 30.69 2hyxA 352 31.09 2ihoA 293 31.30 b.42.2.1,d.3.1.18 147681,147682 3kf5A 512 32.03 2zr1B 267 32.34 1twuA 139 33.08 d.32.1.8 107413 2iwgB 181 33.52 b.29.1.22 145548 1txvA 452 34.14 1bfgA 146 34.41 b.42.1.1 25485 3cjyA 259 34.48 3ef2A 293 35.49 1iwlA 182 36.57 b.125.1.1 83757 3db5A 151 39.07 3b3qE 197 41.80 b.29.1.4 154813 1zxuA 217 45.51 d.23.1.2 125796 2vqaA 361 47.28 2e4qA 109 47.30 1p4kA 295 47.62 d.153.1.5 87772 1mppA 361 47.70 b.50.1.2 26856 2cohA 202 50.89 a.4.5.4,b.82.3.2 130677,130678 3malA 199 51.66 3bk5A 237 51.69 3fzyA 234 52.01 1ksiA 642 52.35 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1ntvA 152 52.39 b.55.1.2 86168 3d7eO 505 52.67 2gkeA 274 53.15 d.21.1.1,d.21.1.1 135329,135330 1s1dA 331 55.10 b.67.3.1 98344 3gf8A 296 55.68 3flcO 518 55.70 3gbtA 504 55.73 2zcwA 202 58.08 3d89A 157 58.12 3k1uA 330 58.63 3k25A 289 60.24 3ewkA 227 60.41 2k7pA 188 61.50 2w40A 503 62.22 1vqoA 240 63.17 b.34.5.3,b.40.4.5 120361,120362 1t9fA 187 63.43 b.42.6.1 106710 2d5fA 493 63.88 1w0pA 781 64.24 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2a13A 166 64.25 b.60.1.8 125971 2e9qA 459 64.31 2vokA 188 64.67 3ezwA 526 65.26 3kcmA 154 65.74 1o6wA 75 65.94 b.72.1.1,b.72.1.1 81103,81104 2zpdA 190 66.93 3kf3A 509 67.65 2e11A 266 67.74 2d4wA 504 69.93 2jmzA 186 70.55 2volB 180 70.79 2oqcA 327 71.49 3hkxA 283 72.17 2kppA 114 72.60 1ybiA 288 74.03 1n1tA 641 74.22 b.29.1.15,b.68.1.1 79821,79822 1y4wA 518 74.41 b.29.1.19,b.67.2.3 116470,116471 2q4nA 166 74.42 b.60.1.8 139871 3ll3A 504 75.96 2zf5O 497 76.02 3c8cA 240 76.97 2q4mA 217 77.19 d.23.1.2 139870 2e1hA 235 77.26 1knmA 130 77.77 b.42.2.1 72781 1ms9A 648 78.35 b.29.1.15,b.68.1.1 85088,85089 3fvhA 237 78.85 2bjfA 329 79.52 2ayh 214 79.77 2qqjA 325 80.52 3lhnA 126 80.59 2q3wA 111 82.32 b.33.1.1 139813 3h46O 506 83.04 2ea7A 434 83.31 1y7mA 164 83.69 b.160.1.1,d.7.1.1 122696,122697 2r19A 159 84.91 2biwA 490 85.05 2yugA 155 86.37 1k2xB 143 86.78 1xj4A 119 87.01 d.110.3.2 122027 1m2tB 263 87.51 b.42.2.1,b.42.2.1 84762,84763 3h3nO 506 88.75 3ld7A 101 89.45 2dk7A 73 89.80