# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 3.81e-16 1gotB 340 4.03e-16 b.69.4.1 27648 2h14A 317 5.43e-16 2bcjB 340 5.56e-16 b.69.4.1 128289 3emhA 318 6.39e-16 1a0rB 340 6.90e-16 b.69.4.1 27658 2gnqA 336 7.52e-16 1gxrA 337 1.19e-15 b.69.4.1 70722 2qc5A 300 1.61e-15 2z2nA 299 2.85e-15 1nr0A 611 3.72e-15 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 7.42e-15 1r5mA 425 7.62e-15 3fm0A 345 7.82e-15 1rwiA 270 1.13e-14 b.68.9.1 97987 3fvzA 329 1.31e-14 1k8kC 372 2.75e-14 b.69.4.1 68308 3acpA 417 2.93e-14 3dxkC 372 4.82e-14 3ei4B 436 4.94e-14 3hrpA 409 6.32e-14 2qxvA 361 7.12e-14 1pguA 615 7.96e-14 b.69.4.1,b.69.4.1 88069,88070 1ri6A 343 8.08e-14 b.69.11.1 97503 1l0qA 391 8.96e-14 b.1.3.1,b.69.2.3 77644,77645 1q7fA 286 1.06e-13 b.68.9.1 96036 2dg1A 333 1.10e-13 b.68.6.1 131493 3dwlC 377 1.29e-13 2oajA 902 1.33e-13 2aq5A 402 1.43e-13 1nexB 464 1.64e-13 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 1.68e-13 3dw8B 447 1.98e-13 3k26A 366 2.12e-13 3bwsA 433 2.51e-13 3i2nA 357 2.78e-13 3hfqA 347 3.13e-13 3greA 437 3.15e-13 2pm7B 297 3.32e-13 1yfqA 342 4.42e-13 b.69.4.2 116680 2p4oA 306 4.61e-13 b.68.6.3 149216 2ovrB 445 4.66e-13 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 5.59e-13 3dsmA 328 5.90e-13 3c99A 432 6.07e-13 1kb0A 677 6.09e-13 a.3.1.6,b.70.1.1 68378,68379 3li3A 314 6.16e-13 2oizA 361 7.05e-13 2hesX 330 7.84e-13 3hxjA 330 8.40e-13 3li5A 314 8.75e-13 2qe8A 343 9.60e-13 2gc7A 386 9.79e-13 b.69.2.1 134954 3cfsB 414 1.04e-12 1pjxA 314 1.12e-12 b.68.6.1 104167 1p22A 435 1.23e-12 a.158.1.1,b.69.4.1 87715,87716 3e5zA 296 1.35e-12 3c75H 426 1.53e-12 1pbyB 337 1.72e-12 b.69.2.2 94422 3gfcA 425 2.09e-12 3i1cA 324 2.09e-12 3li4A 314 2.19e-12 2ad6A 571 2.32e-12 b.70.1.1 126568 2agyA 361 2.36e-12 1jmxB 349 2.88e-12 b.69.2.2 66906 2vduB 450 3.07e-12 2ghsA 326 3.21e-12 b.68.6.1 135209 2oitA 434 3.38e-12 2ojhA 297 3.43e-12 3f3fA 351 3.62e-12 1s4uX 407 4.46e-12 b.69.4.1 112027 2iaaA 390 6.00e-12 3dr2A 305 6.00e-12 2hqsA 415 6.23e-12 b.68.4.1,c.51.2.1 136662,136663 1sq9A 397 6.34e-12 b.69.4.1 105889 2fp8A 322 9.06e-12 2w18A 356 1.20e-11 3fgbA 361 1.23e-11 2j04B 524 1.24e-11 1yiqA 689 1.33e-11 1w6sA 599 1.50e-11 b.70.1.1 114284 1kv9A 668 1.97e-11 a.3.1.6,b.70.1.1 73056,73057 3kyaA 496 2.10e-11 1k32A 1045 2.12e-11 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1jofA 365 3.52e-11 b.69.10.1 71775 2d5lA 706 5.28e-11 3c5mA 396 5.81e-11 3g4eA 297 7.07e-11 1npeA 267 8.33e-11 b.68.5.1 92032 1xipA 388 9.73e-11 b.69.14.1 115360 3ei3A 1158 1.57e-10 2be1A 339 1.71e-10 1v04A 355 1.80e-10 b.68.6.2 100240 3e0cA 1140 2.03e-10 2hu5A 582 2.37e-10 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 5.20e-10 b.70.3.1,c.69.1.24 87354,87355 1cruA 454 1.21e-09 b.68.2.1 27617 2gopA 347 1.38e-09 2wftA 458 2.03e-09 3llpA 493 2.54e-09 3hacA 728 2.56e-09 2z3zA 706 2.60e-09 1h2wA 710 4.42e-09 b.69.7.1,c.69.1.4 76596,76597 1yr2A 741 4.61e-09 1k3iA 656 7.86e-09 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 7.89e-09 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 1.39e-08 2bklA 695 3.66e-08 3dasA 347 4.51e-08 1o6gA 710 8.66e-08 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 1.11e-06 2g8sA 353 2.34e-06 2p9wA 334 5.06e-06 2iwaA 266 5.40e-06 1zgkA 308 7.69e-06 b.68.11.1 145998 3elqA 571 1.13e-05 2vpjA 301 1.30e-05 2fluX 308 2.27e-05 b.68.11.1 133750 3ii7A 306 2.37e-05 2wg4B 457 2.49e-05 1x2jA 316 2.51e-05 b.68.11.1 121643 2wg3C 463 5.38e-05 2wozA 318 9.31e-05 2uvkA 357 0.000137 1mdaH 368 0.000480 b.69.2.1 27637 1h6lA 353 0.000674 b.68.3.1 60687 3hx6A 570 0.000717 2eceA 462 0.000885 2zwaA 695 0.000949 2zuxA 591 0.004391 3gc3B 363 0.005623 3hxrA 761 0.007053 2ebsA 789 0.009295 b.69.13.1,b.69.13.1 146772,146773 1sqjA 789 0.01480 b.69.13.1,b.69.13.1 105918,105919 3h6jA 438 0.01625 3b7fA 394 0.02057 2zuyA 620 0.02642 3l2oB 312 0.02746 2b5nA 323 0.03062 2v05A 311 0.03310 1utcA 363 0.03998 a.118.1.4,b.69.6.1 99914,99915 3f6kA 685 0.1053 2bibA 547 0.1060 b.109.1.1,d.157.1.8 128581,128582 3kciA 389 0.1105 3h7nA 729 0.1233 2sliA 679 0.1589 b.29.1.9,b.68.1.1 24274,27611 2cn3A 737 0.1693 2jkbA 686 0.1799 2w20A 471 0.1952 1ofzA 312 0.1980 b.68.8.1 86978 2jd4A 383 0.2050 2w5nA 367 0.2527 2iwkA 642 0.2722 1fwxA 595 0.3279 b.6.1.4,b.69.3.1 60069,60070 1zi0A 307 0.3543 1q47A 495 0.4744 b.69.12.1 104532 2ww5A 468 0.6762 1suuA 312 0.7242 b.68.10.1 99006 3f7fA 729 0.7562 3silA 379 0.7881 b.68.1.1 27542 2vw2A 697 0.8591 1shyB 551 0.9328 b.69.12.1,g.16.2.1 105565,105566 3cu9A 314 1.352 1wl7A 312 1.444 b.67.2.1 120996 3d61A 314 1.759 2w38A 438 2.097 1wp5A 323 2.245 b.68.10.1 114780 1jtdB 273 2.442 b.69.5.2 67265 1h09A 338 2.453 b.109.1.1,c.1.8.8 83420,83421 3kvcA 533 2.700 1so7A 382 2.956 b.68.1.1 112106 3kstA 306 3.036 1pz7A 204 3.175 b.29.1.4 95405 1olzA 663 3.311 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3kptA 355 3.540 2j04A 588 3.593 1xd5A 112 3.852 b.78.1.1 115155 2f6eA 127 3.971 3d5yA 314 4.144 3l6vA 370 4.181 1yrzA 528 4.340 b.29.1.23,b.67.2.1 123948,123949 3d60A 314 4.439 3fsnA 533 4.485 3a0eA 110 4.939 3lv4A 456 5.077 2uzxB 727 5.103 3c12A 138 5.523 2j8gA 339 5.650 b.109.1.1,c.1.8.8 147915,147916 2bf6A 449 6.568 2ww8A 893 6.599 1qu0A 191 6.870 b.29.1.4 24225 2z8rA 591 8.042 2o62A 270 8.048 b.60.1.9,b.60.1.9 148622,148623 3c2uA 538 8.217 1gyhA 318 8.414 b.67.2.1 70757 2ac1A 541 8.466 1xksA 450 8.493 b.69.14.1 115422 2wl1A 191 8.675 1w8oA 601 8.750 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1h30A 422 9.443 b.29.1.4,b.29.1.4 76604,76605 1jpcA 109 9.97 b.78.1.1 27986 3c3vA 510 10.11 1iwlA 182 10.39 b.125.1.1 83757 3flpA 217 11.61 1kj1D 109 12.43 b.78.1.1 68639 1zvtA 256 13.40 1vkdA 338 14.24 b.67.2.4 108644 2hboA 158 15.75 d.38.1.5 136319 2bwrA 401 15.81 2aukA 190 16.46 2e11A 266 16.47 3cjyA 259 17.23 1c3mA 147 18.66 b.77.3.1 27983 2h0bA 184 19.15 3c9zA 258 19.36 2wjsA 608 19.82 2ej8A 160 19.90 3fz3A 531 20.07 3kb5A 193 20.84 2dpfA 115 21.37 3dzwA 109 22.24 1gqzA 274 22.40 d.21.1.1,d.21.1.1 83311,83312 2r16A 182 23.28 1uypA 432 24.63 b.29.1.19,b.67.2.3 100176,100177 1uv4A 293 24.69 b.67.2.1 119705 1wlgA 299 24.98 b.152.1.1 114726 3cpnA 330 25.53 3bodA 178 25.64 2iwgB 181 25.96 b.29.1.22 145548 3bk5A 237 25.99 2zpdA 190 26.18 3fzyA 234 28.50 2cohA 202 28.80 a.4.5.4,b.82.3.2 130677,130678 2jxwA 75 29.53 2pz4A 239 29.72 3hlkA 446 29.95 3hkxA 283 30.05 2i7fA 108 30.22 1qxmA 300 30.84 b.42.2.1,b.42.2.1 96533,96534 3hd8A 389 31.22 2zcwA 202 31.72 3k2iA 422 31.75 2bgzA 299 31.75 3l5eA 414 32.70 2w1vA 276 35.70 2b20A 403 36.35 b.1.18.20,c.69.1.2 127685,127686 3db5A 151 37.21 3hmyA 450 37.61 2burA 209 38.31 b.3.6.1 129227 2ayhA 214 39.37 b.29.1.2 24172 1at0A 145 39.72 b.86.1.1 28374 2gkeA 274 42.94 d.21.1.1,d.21.1.1 135329,135330 3c7fA 487 43.42 2gu1A 361 43.79 3kcmA 154 44.41 3ge2A 130 45.09 1f89A 291 45.36 d.160.1.1 64988 1vqoA 240 45.90 b.34.5.3,b.40.4.5 120361,120362 1ntvA 152 46.58 b.55.1.2 86168 3ef2A 293 47.39 1w0pA 781 47.78 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1bfgA 146 48.09 b.42.1.1 25485 3ah2A 288 48.12 1w2tA 432 48.24 b.29.1.19,b.67.2.3 120607,120608 1a9xB 379 48.56 c.8.3.1,c.23.16.1 30732,31409 3lhnA 126 49.25 1s7jA 262 51.10 d.21.1.2 98647 1s1dA 331 51.37 b.67.3.1 98344 2hyxA 352 51.40 3ld7A 101 53.93 3d7eO 505 55.16 3ewkA 227 56.47 1twuA 139 56.65 d.32.1.8 107413 2k7pA 188 56.67 3flcO 518 57.29 1y7mA 164 58.73 b.160.1.1,d.7.1.1 122696,122697 3gbtA 504 59.11 2gf3A 389 59.59 c.3.1.2,d.16.1.3 135070,135071 2hfsA 332 59.91 3b3qE 197 61.04 b.29.1.4 154813 1nnxA 109 63.31 b.40.10.1 92013 2vouA 397 63.55 c.3.1.2,d.16.1.2 153389,153390 3gf8A 296 63.79 2d5fA 493 65.27 2e4qA 109 65.51 3hz6A 511 66.09 2kppA 114 66.15 2w40A 503 66.24 2q3wA 111 67.10 b.33.1.1 139813 1j58A 385 67.54 b.82.1.2 71531 3h46O 506 68.43 1p4kA 295 68.58 d.153.1.5 87772 2bc4A 211 69.00 2ihoA 293 69.01 b.42.2.1,d.3.1.18 147681,147682 3a1jC 263 70.83 3l0qA 554 72.50 1y7bA 542 73.64 b.29.1.23,b.67.2.1 122687,122688 2e9qA 459 74.05 1y4wA 518 74.82 b.29.1.19,b.67.2.3 116470,116471 3ibzA 191 75.61 3fijA 254 75.85 1juhA 350 75.92 b.82.1.5 71884 3h3nO 506 76.66 2d4wA 504 76.98 3ll3A 504 77.87 2vqaA 361 78.40 1jfuA 186 79.01 c.47.1.10 62940 3ilfA 268 79.09 2cl2A 298 79.80 2zylA 386 80.40 2biwA 490 81.57 2o34A 250 82.30 d.96.2.2 148565 3fvhA 237 82.72 2ea7A 434 83.04 2in5A 207 83.14 b.177.1.1 147736 1f5mA 180 83.36 d.110.2.1 40895 1mppA 361 85.83 b.50.1.2 26856 3gceA 121 86.15 1k9vF 201 86.24 c.23.16.1 68365 1wmvA 54 87.33 3eurA 142 87.64 2e1hA 235 87.98 2de6D 115 88.33 1o6wA 75 88.63 b.72.1.1,b.72.1.1 81103,81104 1xe7A 203 89.15 b.82.1.16 115213 2ofcA 142 89.46